CaDHN3, a Pepper (Capsicum annuum L.) Dehydrin Gene Enhances the Tolerance against Salt and Drought Stresses by Reducing ROS Accumulation

Dehydrins (DHNs) play an important role in abiotic stress tolerance in a large number of plants, but very little is known about the function of DHNs in pepper plants. Here, we isolated a Y₁SK₂-type DHN gene “CaDHN3” from pepper. To authenticate the function of CaDHN3 in salt and drought stresses, it was overexpressed in Arabidopsis and silenced in pepper through virus-induced gene silencing (VIGS). Sub-cellular localization showed that CaDHN3 was located in the nucleus and cell membrane. It was found that CaDHN3-overexpressed (OE) in Arabidopsis plants showed salt and drought tolerance phenotypic characteristics, i.e., increased the initial rooting length and germination rate, enhanced chlorophyll content, lowered the relative electrolyte leakage (REL) and malondialdehyde (MDA) content than the wild-type (WT) plants. Moreover, a substantial increase in the activities of antioxidant enzymes; including the superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), ascorbate peroxidase (APX), and lower hydrogen peroxide (H₂O₂) contents and higher O₂^•− contents in the transgenic Arabidopsis plants. Silencing of CaDHN3 in pepper decreased the salt- and drought-stress tolerance, through a higher REL and MDA content, and there was more accumulation of reactive oxygen species (ROS) in the CaDHN3-silenced pepper plants than the control plants. Based on the yeast two-hybrid (Y2H) screening and Bimolecular Fluorescence Complementation (BiFC) results, we found that CaDHN3 interacts with CaHIRD11 protein in the plasma membrane. Correspondingly, the expressions of four osmotic-related genes were significantly up-regulated in the CaDHN3-overexpressed lines. In brief, our results manifested that CaDHN3 may play an important role in regulating the relative osmotic stress responses in plants through the ROS signaling pathway. The results of this study will provide a basis for further analyses of the function of DHN genes in pepper.     

Scientific Workflow Makespan Minimization in Edge Multiple Service Providers Environment

The edge computing model offers an ultimate platform to support scientific and real-time workflow-based applications over the edge of the network. However, scientific workflow scheduling and execution still facing challenges such as response time management and latency time. This leads to deal with the acquisition delay of servers, deployed at the edge of a network and reduces the overall completion time of workflow. Previous studies show that existing scheduling methods consider the static performance of the server and ignore the impact of resource acquisition delay when scheduling workflow tasks. Our proposed method presented a meta-heuristic algorithm to schedule the scientific workflow and minimize the overall completion time by properly managing the acquisition and transmission delays. We carry out extensive experiments and evaluations based on commercial clouds and various scientific workflow templates. The proposed method has approximately 7.7% better performance than the baseline algorithms, particularly in overall deadline constraint that gives a success rate.

     

Effects of feeding bentonite clay upon ochratoxin A–induced immunosuppression in broiler chicks

A presence of mycotoxins in feed is one of the most alarming issues in the poultry feed industry. Ochratoxins, produced by several Aspergillus and Penicillium species, are important mycotoxin regarding the health status of poultry birds. Ochratoxins are further classified into to several subtypes (A, B, C, etc) depending on their chemical structures, but ochratoxin A (OTA) is considered the most important and toxic. Bentonite clay, belonging to phyllosilicates and formed from weathering of volcanic ashes, has adsorbent ability for several mycotoxins. The present study was designed to study the effects of bentonite clay upon OTA-induced immunosuppression in broiler chicks. For this, 480 day-old broiler chicks were procured from a local hatchery and then different combinations of OTA (0.15, 0.3, or 1.0 mg/kg) and bentonite clay (5, 10, and 20 g/kg) were incorporated into their feed. At 13, 30, and 42 days of age, parameters such as antibody responses to sheep red blood cells, in situ lymphoproliferative responses to mitogen (PHA-P), and in situ phagocytic activity (i.e., via carbon clearance) were determined respectively. The results indicated there was a significant reduction of total antibody and immunoglobulin titres, lymphoproliferative responses, and phagocytic potential in OTA-treated birds, suggesting clear immunosuppression by OTA in birds in a dose-dependent manner. These results were also significantly lower in all combination groups (OTA with bentonite clay), suggesting few to no effects of feeding bentonite clay upon OTA- induced alterations in different immune parameters.     

Effects of Dissimilar Alumina Particulates on Microstructure and Properties of Cold-Sprayed Alumina/A380 Composite Coatings

In this study,alumina/A380 composite coatings were fabricated by cold spray.The influence of alumina particulates' morphology(spherical and irregular) and content on the deposition behavior of the coatings(including surface roughness,surface residual stress,cross-sectional microstructure and microhardness) was investigated.Results revealed that the spherical alumina mainly shows micro-tamping effect during deposition,which result in remarkable low surface roughness and porosity of the coatings.In addition,very low deposition efficiency and good interfacial bonding between the coating and the substrate were achieved.For irregular alumina particles,the embedding of ceramic particulates in the coating was dominant during deposition process,resulting in high retention in the final deposit.However,it showed limited influence on porosity,surface roughness and interfacial bonding of the deposit.The coatings containing irregular alumina particulates exhibited much higher microhardness than those containing spherical alumina due to the higher load-bearing capacity of deposited alumina.     

Synthesis and characteristics of fly ash and bottom ash based geopolymers–A comparative study

The research was carried out to develop geopolymers mortars and concrete from fly ash and bottom ash and compare the characteristics deriving from either of these products. The mortars were produced by mixing the ashes with sodium silicate and sodium hydroxide as activator solution. After curing and drying, the bulk density, apparent density and porosity, of geopolymer samples were evaluated. The microstructure, phase composition and thermal behavior of geopolymer samples were characterized by scanning electron microscopy, XRD and TGA-DTA analysis respectively. FTIR analysis revealed higher degree of reaction in bottom ash based geopolymer. Mechanical characterization shows, geopolymer processed from fly ash having a compressive strength 61.4 MPa and Young's modulus of 2.9 GPa, whereas bottom ash geopolymer shows a compressive strength up to 55.2 MPa and Young's modulus of 2.8 GPa. The mechanical characterization depicts that bottom ash geopolymers are almost equally viable as fly ash geopolymer. Thermal conductivity analysis reveals that fly ash geopolymer shows lower thermal conductivity of 0.58 W/mK compared to bottom ash geopolymer 0.85 W/mK.     

Extraction of Bitter Acids from Hops and Hop Products Using Pressurized Solvent Extraction (PSE)

The EBC method 7.7, currently used for determination of bitter acids in hop products, is a time‐consuming and laborious extraction technique. In this paper, our aim was to propose a new extraction method based on Pressurized Solvent Extraction (PSE) sometimes also called Pressurized Fluid Extraction (PFE) or Accelerated Solvent Extraction (ASE). Compared to conventional extractions, PSE offers a number of important benefits. PSE on OnePSE^® automated extractor was used for extraction of α‐ and β‐acids from hops and hop products and the parameters influencing extraction efficiency and the influence of the sample preparation method were studied. The quantitative determination of α‐ and β‐acids in the extracts was accomplished by using an HPLC apparatus equipped with diode array detector. The experimental results were compared with those obtained by the standard EBC 7.7 method and the two methods were found to be fully compatible     

Using Faster Gas Chromatography Analyses in Brewing Analytics

Dominant trends in analytical chemistry include miniaturization in sample preparation techniques and faster run times to provide high‐throughput screening, fast process monitoring and fast method development. This study focused on the application of narrow bore gas chromatographic capillary columns, 0.18 mm internal diameter, for brewing analyses. On these capillary columns, faster analyses could be performed compared to conventional GC capillary columns using 0.32 to 0.53 mm internal diameters. The robustness of the state‐of‐the‐art faster capillary gas chromatography, without compromising resolution, has been demonstrated with the analyses of beer flavour compounds such as lower and higher alcohols, esters and other volatile compounds such as acetaldehyde and dimethyl sulphide in beer. These methods were able to reduce sample run times by 60%.     

Nucleotide degradation products of gamma‐irradiated sea bream (Sparus aurata) stored in ice

Nucleotide degradation products of irradiated sea bream stored up to 19 days in ice were investigated. Irradiation had significant effect on the nucleotide concentrations in sea bream muscle (P < 0.05). The results showed that the highest value of inosine monophosphate (IMP) was observed in irradiated sea bream at 5 kGy, followed by at 2.5 kGy. Initial inosine (INO) concentration in irradiated sea bream at 5 kGy was 4.26 μmoles g^?1, which reached maximum value of 8.83 μmoles g^?1 when fish completely spoiled (19 days). When the fish reached the limit of acceptability, the mean values of K, Ki, H and G were 86.8%, 90.3%, 59.8% and 213.9% for unirradiated sea bream, 85.2%, 87.8%, 56.8% and 197.8% for irradiated sea bream at 2.5 kGy and 88.4%, 90.9%, 57.8%, 211.5% for irradiated sea bream at 5 kGy, respectively. The results of this study indicated that nucleotide degradation was more rapid in unirradiated sea bream than those irradiated. K, Ki, H and G value in irradiated fish can be used as a freshness index because there is a good linear relationship between values and storage time of fish.     

Bayesian approach to parameter estimation of the generalized pareto distribution

Several methods have been used for estimating the parameters of the generalized Pareto distribution (GPD), namely maximum likelihood (ML), the method of moments (MOM) and the probability-weighted moments (PWM). It is known that for these estimators to exist, certain constraints have to be imposed on the range of the shape parameter,k, of the GPD. For instance, PWM and ML estimators only exist fork>−0.5 andk≤1, respectively. Moreover, and particularly for small sample sizes, the most efficient method to apply in any practical situation highly depends on a previous knowledge of the most likely values ofk. This clearly suggests the use of Bayesian techniques as a way of using prior information onk. In the present work, we address the issue of estimating the parameters of the GPD from a Bayesian point of view. The proposed approach is compared via a simulation study with ML, PWM and also with the elemental percentile method (EPM) which was developed by Castillo and Hadi (1997). The estimation procedure is then applied to two real data sets.     

Retrieving relevant time‐course experiments: a study on Arabidopsis microarrays

Understanding time‐course regulation of genes in response to a stimulus is a major concern in current systems biology. The problem is usually approached by computational methods to model the gene behaviour or its networked interactions with the others by a set of latent parameters. The model parameters can be estimated through a meta‐analysis of available data obtained from other relevant experiments. The key question here is how to find the relevant experiments which are potentially useful in analysing current data. In this study, the authors address this problem in the context of time‐course gene expression experiments from an information retrieval perspective. To this end, they introduce a computational framework that takes a time‐course experiment as a query and reports a list of relevant experiments retrieved from a given repository. These retrieved experiments can then be used to associate the environmental factors of query experiment with the findings previously reported. The model is tested using a set of time‐course Arabidopsis microarrays. The experimental results show that relevant experiments can be successfully retrieved based on content similarity.Inspec keywords: botany, lab‐on‐a‐chip, genetics, bioinformatics, information retrieval, data mining, data analysis, associative processingOther keywords: relevant time‐course experiment retrieval, time‐course Arabidopsis microarray, time‐course gene regulation, stimulus response, systems biology, computational method, gene behaviour model, gene networked interaction, latent parameter, model parameter estimation, meta‐analysis, data analysis, time‐course gene expression experiment, information retrieval, computational framework, time‐course experiment query, relevant experiment list, repository, environmental factor, query experiment, experimental content similarity