Cancer Cell Response to Anthracyclines Effects: Mysteries of the Hidden Proteins Associated with These Drugs

A comprehensive proteome map of T-lymphoblastic leukemia cells and its alterations after daunorubicin, doxorubicin and mitoxantrone treatments was monitored and evaluated either by paired comparison with relevant untreated control and using multivariate classification of treated and untreated samples. With the main focus on early time intervals when the influence of apoptosis is minimized, we found significantly different levels of proteins, which corresponded to 1%–2% of the total amount of protein spots detected. According to Gene Ontology classification of biological processes, the highest representation of identified proteins for all three drugs belong to metabolic processes of proteins and nucleic acids and cellular processes, mainly cytoskeleton organisation and ubiquitin-proteasome pathway. Importantly, we observed significant proportion of changes in proteins involved in the generation of precursor metabolites and energy typical for daunorubicin, transport proteins participating in response to doxorubicin and a group of proteins of immune system characterising response to mitoxantrone. Both a paired comparison and the multivariate evaluation of quantitative data revealed daunorubicin as a distinct member of the group of anthracycline/anthracenedione drugs. A combination of identified drug specific protein changes, which may help to explain anti-cancer activity, together with the benefit of blocking activation of adaptive cancer pathways, presents important approaches to improving treatment outcomes in cancer.     

Comparison of the Flow of Permanent and Condensable Gases through an Asymmetric Porous Membrane

Porous inorganic membranes are usually composed of several layers, which are asymmetric with respect to the flow direction. For permanent gases, investigations about the influence of the flow direction on the mass flux through an asymmetric ceramic membrane were previously performed and can be found in literature. Mass flow differences between the two flow directions were calculated. Here the flow of condensable gases, i.e., of vapors, through the same membrane is analyzed and it is shown that the mass flow might be up to 40 % larger in one direction than in the other direction.     

Melectin: a novel antimicrobial peptide from the venom of the cleptoparasitic bee Melecta albifrons

A novel antimicrobial peptide designated melectin was isolated from the venom of the cleptoparasitic bee Melecta albifrons. Its primary sequence was established as H-Gly-Phe-Leu-Ser-Ile-Leu-Lys-Lys-Val-Leu-Pro-Lys-Val-Met-Ala-His-Met-Lys-NH(2) by Edman degradation and ESI-QTOF mass spectrometry. Synthetic melectin exhibited antimicrobial activity against both gram-positive and -negative bacteria and it degranulated rat peritoneal mast cells, but its hemolytic activity was low. The CD spectra of melectin measured in the presence of trifluoroethanol and sodium dodecyl sulfate showed a high content alpha-helices, which indicates that melectin can adopt an amphipathic alpha-helical secondary structure in an anisotropic environment such as the bacterial cell membrane. To envisage the role of the proline residue located in the middle of the peptide chain on biological activity and secondary structure, we prepared several melectin analogues in which the Pro11 residue was either replaced by other amino acid residues or was omitted. The results of biological testing suggest that a Pro kink in the alpha-helical structure of melectin plays an important role in selectivity for bacterial cells. In addition, a series of N- and C-terminal-shortened analogues was synthesized to examine which region of the peptide is related to antimicrobial activity.     

Effect of ozonation on polychlorinated biphenyl degradation and on soil physico-chemical properties

The objectives of this study were to investigate the effectiveness of ozone treatment on degradation of polychlorinated biphenyl (PCB) contaminated soils and to observe the subsequent changes in soil physico-chemical properties. Furthermore, the ability of plants to grow on the ozone-treated soils was evaluated. Soils with different physico-chemical characteristics spiked with seven PCB congeners in two different time periods were chosen. Ozonation was more efficient for PCB degradation in freshly spiked soils and the removal efficiency increased with increasing ozonation time. The highest decrease was found in the soil with a lower soil organic matter (SOM) content and a coarser soil structure indicating the substantial effect of soil characteristics on the efficiency of ozonation. The composition of individual PCB congeners changed in all treatments in terms of higher accumulation rate of highly chlorinated biphenyls with a higher ozonation time. Increased mobility of several elements, changes in SOM content and in soil pH were detected after ozonation. Vulnerability of plants to these modifications was documented on rape seedlings. No inhibition in growth during any treatment and predominantly higher concentration of PCB in non-ozonated treatments were observed. Results suggest that this method can present a promising environmental friendly remediation technology for PCB contaminated soils.     

Diagnosing Czech Patients with Inherited Platelet Disorders

A single-center study was conducted on 120 patients with inherited disorders of primary hemostasis followed at our hematological center. These patients presented a variety of bleeding symptoms; however, they had no definitive diagnosis. Establishing a diagnosis has consequences for the investigation of probands in families and for treatment management; therefore, we aimed to improve the diagnosis rate in these patients by implementing advanced diagnostic methods. According to the accepted international guidelines at the time of study, we investigated platelet morphology, platelet function assay, light-transmission aggregometry, and flow cytometry. Using only these methods, we were unable to make a definitive diagnosis for most of our patients. However, next-generation sequencing (NGS), which was applied in 31 patients, allowed us to establish definitive diagnoses in six cases (variants in ANKRD26, ITGA2B, and F8) and helped us to identify suspected variants (NBEAL2, F2, BLOC1S6, AP3D1, GP1BB, ANO6, CD36, and ITGB3) and new suspected variants (GFI1B, FGA, GP1BA, and ITGA2B) in 11 patients. The role of NGS in patients with suspicious bleeding symptoms is growing and it changes the diagnostic algorithm. The greatest disadvantage of NGS, aside from the cost, is the occurrence of gene variants of uncertain significance.     

Thapsigargin-Stimulated LAD2 Human Mast Cell Line Is a Potent Cellular Adjuvant for the Maturation of Monocyte-Derived Dendritic Cells for Adoptive Cellular Immunotherapy

The preparation of dendritic cells (DCs) for adoptive cellular immunotherapy (ACI) requires the maturation of ex vivo-produced immature(i) DCs. This maturation ensures that the antigen presentation triggers an immune response towards the antigen-expressing cells. Although there is a large number of maturation agents capable of inducing strong DC maturation, there is still only a very limited number of these agents approved for use in the production of DCs for ACI. In seeking novel DC maturation agents, we used differentially activated human mast cell (MC) line LAD2 as a cellular adjuvant to elicit or modulate the maturation of ex vivo-produced monocyte-derived iDCs. We found that co-culture of iDCs with differentially activated LAD2 MCs in serum-containing media significantly modulated polyinosinic:polycytidylic acid (poly I:C)-elicited DC maturation as determined through the surface expression of the maturation markers CD80, CD83, CD86, and human leukocyte antigen(HLA)-DR. Once iDCs were generated in serum-free conditions, they became refractory to the maturation with poly I:C, and the LAD2 MC modulatory potential was minimized. However, the maturation-refractory phenotype of the serum-free generated iDCs was largely overcome by co-culture with thapsigargin-stimulated LAD2 MCs. Our data suggest that differentially stimulated mast cells could be novel and highly potent cellular adjuvants for the maturation of DCs for ACI.     

Discrete Fourier transform-based analysis of HeLa cell microtubules after ultrasonic exposure

Cytoskeletal structures can be affected by external factors including ultrasound. Our task was to develop a structure analysis method to evaluate these changes quantitatively. We exposed HeLa cells to continuous ultrasound (1 MHz, 1 and 2 W/cm2, 10 min at 37 degrees C). The microtubules were detected by the monoclonal antibody TU-01/SwAM/FITC, observed in a fluorescence microscope and photographed digitally. The images were processed by "FFT magic" software. The structure analysis is based on frequency domain filtering using discrete Fourier transform. The basic idea is to design filters to extract information describing best the structural changes. The properties of the filter can be enhanced by direction filtering, i.e., extraction of a symmetric angular segment in the frequency domain centered on a zero frequency. The final image is a normalized sum of inverse FFT's of such segmented spectra. We needed a method yielding a single number assigned to the structure, e.g., the ratio of the area of microtubules to the total cell area. Assuming that the image background intensity is constant, we can use thresholding to detect areas occupied by the cells. The information about the area of the microtubules is contained in a wide range of higher intensities. Therefore, we use a gamma correction. The area occupied by microtubules is then considered an area with intensities above the selected threshold. There were tested three different filters to extract information about microtubules. The mathematical method chosen seems sensitive enough for quantitative assessment of changes of the microtubular network.     

Using tree core samples to monitor natural attenuation and plume distribution after a PCE spill

The potential of using tree core samples to detect and monitor natural attenuation of perchloroethene (PCE) in groundwater was investigated at a PCE-contaminated site. In the area of the known plume with PCE concentrations between 0.004 and > 40 mg/L, cores were collected from tree trunks at a height of about 1 m above ground surface. Tree sampling of the site was completed in under six hours. Chlorinated ethenes were analyzed by headspace GC/MS. PCE (0.001 to 7 mg/ kg) and natural attenuation products, TCE (< 0.001 to 0.4 mg/ kg) and c-DCE (< 0.001 to 0.46 mg/kg), were detected in tree cores. 1,1-dichloroethene and vinyl chloride were not detected, corresponding to very low concentrations in the groundwater. The contaminant plume was mapped from the concentrations measured in trees, which delineated a probable hot spot area that had been undetected in decades of traditional groundwater monitoring. Natural attenuation products in tree cores increased with distance from the known source area. Concentrations of PCE and reductive dechlorination products in tree cores were correlated with the corresponding groundwater concentrations. Within a range of limitations, tree-core sampling provides a rapid, reliable and inexpensive method to investigate the extent of shallow contamination by chlorinated ethenes in soil and groundwater.     

Determination of certain micro and macroelements in plant stimulants and their infusions

The quantitative analysis of Al, B, Cu, Fe, Mn, P and Zn by inductively coupled plasma optical emission spectrometry (ICP-OES) and Ca, K and Mg by atomic absorption spectrometry (AAS) has been carried out in both the raw material and infusions from 31 samples of traditional plant stimulants (tea and coffee) and mate, rooibos, honeybush and chamomile. The results were discussed with respect to differences to the beverage quality and their role in the human diet. The levels of elements not significantly differ between tea types (black, green, oolong, white), and between Arabica and Robusta coffee. In comparison with tea, coffee was found to be a poor source of elements with the exception of Ca and Fe. High levels of B, Ca, Cu, Mn, Mg and Zn were found in mate (mainly green type) and of B, Ca, Cu, Fe and P in chamomile, whereas the amounts of all elements in rooibos and honeybush infusions were low (except of Ca). Apart from tea, other stimulants appeared to not represent important sources of potentially harmful amounts of Al for the human diet.