To model the molten globule structure of -lactalbumin, moleculardynamics (MD) simulations were carried out for the protein inexplicit water at high temperature. In these simulations, long-rangeCoulomb interactions were evaluated explicitly with an originalmethod (particleparticle and particlecell: PPPC)to avoid artifacts caused by the cut-off. The MD simulationswere started from two initial conditions to verify that similarresults would be obtained. From the last 150 ps trajectoriesof the two MD simulations, two partially unfolded average structureswere obtained. These structures had the following common structuralfeatures which are characteristic of the molten globule state.The radii of gyration for these conformations were 7.4 and 9.6%larger than that of the native state. These values were almostthe same as the experimental value (9.6%) observed recentlyby small-angle X-ray scattering (Kataoka,M., Kuwajima,K., Tokunaga,F.and Goto,Y., 1997, Protein Sci., 6, 422430). Furthermore,aromatic residues of clusters I and II in these structures werefar apart from each other except for Try103Trp104. Thisresult is in good agreement with NMR experimental results forthe acid-denatured molten globule state (Alexandrescu et al.,1992, 1993); that is, NOE signals between the aromatic residueswere not observed, except for that of Try103Trp104 inthe molten globule state. Other structural features of thesemodels for the molten globule state are discussed with referenceto native state structures. 相似文献
This paper describes a kinetic method to predict the z-average molecular mean square radius of gyration of tree-like polymers formed by irreversible reactions, assuming Gaussian chains. It is based on the population balance equations for the two-sided molecular distributions of pendant chains associated with every chemically distinguishable kind of bonds. An automated method for the solution of those equations is valid both before as well as after gelation for complex kinetic schemes. Examples of its use are presented with polycondensation systems leading to hyperbranched polymers, the anionic polymerization of mono- and divinyl monomers and a radical polymerization with terminal branching and transfer to polymer. 相似文献
A pressurized melt gyration process has been used for the first time to generate poly(ε‐caprolactone) (PCL) fibers. Gyration speed, working pressure, and melt temperature are varied and these parameters influence the fiber diameter and the temperature enabled changing the surface morphology of the fibers. Two types of nonwoven PCL fiber constructs are prepared. First, Ag‐doped PCL is studied for antibacterial activity using Gram‐negative Escherichia coli and Pseudomonas aeruginosa microorganisms. The melt temperature used to make these constructs significantly influences antibacterial activity. Neat PCL nonwoven scaffolds are also prepared and their potential for application in muscular tissue engineering is studied with myoblast cells. Results show significant cell attachment, growth, and proliferation of cells on the scaffolds.
A Monte Carlo computer simulation model for the electrophoretic deposition of polymer chains on a discrete lattice is used to study the polymer density profile, interface growth, and its dependence on field, temperature, and molecular weight. The interface width (W) decreases WE−1/2 on increasing the field (E). Width (W) depends non-monotonically on the temperature (T): a power-law decay is followed by a power-law increase on raising the temperature. Monotonic decay of the interface width with the molecular weight is possibly a stretched exponential. Conformation and dynamics of a tracer chain is used to probe its characteristics in interface to bulk region. The root mean square (rms) displacement of the center of mass of the tracer chain shows an ultra-slow motion, Rtν (ν0.1–0.01 at E=0.1–1.0) as the driven chain moves deeper from interface to bulk. Longitudinal compression of the radius of gyration (Rg) of the chain increases with the field; transverse components (Rgx, Rgy) are larger than the longitudinal component (Rgz). The transverse component (Rgx(y)) becomes oscillatory due to periodic squeezing at high fields as the field competes with the polymer barriers. 相似文献