Distribution of Salmonella clonal groups in four Brazilian feed mills

Feed is one of the major vehicles for Salmonella transmission to pigs, and its spread during the milling process may play an important role in feed contamination. Therefore, a cross-sectional study was carried out in four feed mills in order to evaluate the frequency of Salmonella isolation at various stages of feed production and to track the spread of genotypically related isolates grouped by pulsed-field gel electrophoresis (PFGE). From a total of 1269 analyzed samples, 63 (4.96%) showed the presence of Salmonella. Evaluated feed mills (A, B, C and D) presented 3.5% (n = 11/317), 1.7% (n = 5/289), 7.5% (n = 23/308) and 7.0% (n = 25/355) positive samples, respectively. Twenty-three serovars were identified, with the most frequently detected being Montevideo (n = 14, 22.2%), Anatum (n = 8, 12.7%) and Senftenberg (n = 8, 12.7%). The isolation of Salmonella was significantly higher (p = 0.002) in samples with the presence of total coliforms (36/489; 7.36%) than in the coliform-negative samples (27/780; 3.46%). Conveyors (OR = 4.43, 95% CI: 2.43–8.09) were the most likely sites of Salmonella isolation, followed by dust settled on the feed mill's floor (OR = 2.88, 95% CI: 1.41–5.33). Isolates indistinguishable on PFGE or belonging to pulsotypes with a high similarity (>95%) were identified in serovars Agona, Infantis, Montevideo, Orion, Senftenberg and Worthington. In particular, clonal groups of serovars Montevideo and Senftenberg were found to be disseminated among different sample types (ingredients, dust collected from the premise's floor and complete feed) or to be endemic in the feed mills. The dissemination of Salmonella clonal groups demonstrates the importance of control measures to avoid dust and debris accumulation on equipment surfaces.     

Application of molecular identification tools for Lactobacillus, with a focus on discrimination between closely related species: A review

Lactobacillus is among the most important GRAS food lactic acid bacteria, with nearly 140 species at present, mostly of industrial importance. Being part of the natural flora of a range of food products like raw milk, fermented dairy products, fruits, vegetables, meat products they also serve as starters for a number of fermented food products either to enhance the quality or to add health benefits. These groups of economically important species are often alike in phenotypic and physiological characteristics, probably due to their co-evolution in the same ecological niches; hence they are difficult to be differentiated. This demands advanced methods for their proper identification and characterization. With the advancement of molecular biology, a range of DNA-based molecular techniques has replaced the largely cumbersome phenotypic methods. This review summarizes the various molecular techniques available for detection and identification within the genus Lactobacillus, with special emphasis on the four groups of closely resembling species: L. casei group, L. acidophilus group, L. delbrueckii subspecies, and L. plantarum group. This review also provides insights into current trends for alternative molecular markers other than 16S rRNA to resolve the ambiguity within phylogenetically close species in the genus Lactobacillus.     

Listeria monocytogenes in ready-to-eat foods in Italy: Prevalence of contamination at retail and characterisation of strains from meat products and cheese

In the framework of a European Union (EU) Coordinated Monitoring Programme, different types of ready-to eat (RTE) products, including soft and semi-soft cheese (n = 398) and cooked meat products (n = 403), were collected at retail in Italy and tested for detection and enumeration of Listeria monocytogenes. An Integrative Survey of 2696 samples, including soft and semi-soft cheese (n = 894) and cooked meat products (n = 1802) was carried out to have statistically representative results at the national level. Considering the results obtained both from the EU and the national Integrative Survey, prevalence of contamination of meat products was 1.66% (95% CL: 1.02–2.73%) at the arrival of the samples at the laboratory and 1.92% (95% CL: 1.31%–2.82%) at the end of shelf-life. Spalla cotta was the most frequently contaminated meat product. Prevalence of contamination in cheese was 2.13% (95% CL: 1.37%–3.3%) at the arrival at the laboratory and 1.01% (95% CL: 0.41%–2.55%) at the end of shelf-life. To get information about differences between cheese rinds and pastes, these two parts were separately analysed in the Integrative Survey samples. L. monocytogenes was detected in 4.02% (95% CL: 2.60%–6.19%) of cheese rinds (n = 473), whereas only the 0.34% (95% CL: 0.12%–0.98%) of cheese pastes (n = 894) were contaminated. This difference was statistically significant (χ² = 10.026, P < 0.05). Gorgonzola and Taleggio were the most frequently contaminated cheeses. Non-compliance with EU official criteria (100 CFU/g) was reported in 0.55% of meat products at arrival at the laboratory, in 0.46% at the end of shelf-life, and in 1.9% of cheese rinds. PFGE showed that cheese rinds could have been the origin of the few pastes' contamination, highlighting genetic similarity between isolates found in these two cheese components. Genetic subtyping also showed the presence of different pulsotypes, usually belonging to different clusters, in isolates from different food types. The presence of some pulsotypes predominantly prevalent over the others, in products from the same manufacturer, could suggest environmental strains as the main source of contamination.     

Identification and characterization of Saccharomyces cerevisiae strains isolated from West African sorghum beer

The occurrence and characterization of yeasts isolated from sorghum beer produced in Ghana and Burkina Faso, West Africa, were investigated. The yeasts involved in the fermentations were found to consist of Saccharomyces spp. almost exclusively. Of the isolates investigated, 45% were identified as Saccharomyces cerevisiae, whereas more than half of the isolates (53%) had physiological properties atypical of S. cerevisiae or any other member of the complex sensu strictu, as they were able to assimilate only glucose, maltose and ethanol as carbon sources. Both ITS-PCR RFLP and PFGE strongly indicated that these isolates were related to S. cerevisiae, regardless of their phenotypic characteristics. Sequencing of the D1/D2 domain of the 26S rDNA confirmed the close relatedness to S. cerevisiae with 0.5% nucleotide differences. The MAL1 and MAL3 loci were found for all isolates as the only recognized MAL loci. Besides, for 40% of the isolates the MAL61 probe hybridized to a position of about 950 kbp, which has not formerly been described as a MAL locus. The results showed that the spontaneous fermentation of West African sorghum beer is dominated by a variety of strains of S.cerevisiae not previously described, among which starter cultures should be selected.     

Molecular subtypes of Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from faecal and surface water samples in the Oldman River watershed, Alberta, Canada

Campylobacter spp., Salmonella enterica, and Escherichia coli O157:H7 isolated from 898 faecal, 43 sewage, and 342 surface water samples from the Oldman River were characterized using bacterial subtyping methods in order to investigate potential sources of contamination of the watershed. Among these pathogens, Campylobacter spp. were the most frequently isolated from faecal, sewage, and surface water samples (266/895, 11/43, and 91/342, respectively), followed by Salmonella (67/898, 8/43, and 29/342, respectively), and E. coli O157:H7 (16/898, 2/43, and 8/342, respectively). Salmonella Rubislaw was the most common serovar isolated from water. This serovar was also isolated from two wild bird species. Most other serovars isolated from water were either not isolated from animals or were isolated from multiple species. E. coli O157:H7 was predominantly isolated from cattle. The most common phage-types of this pathogen from cattle were also the most common among water isolates, and there were exact pulsed field gel electrophoresis and comparative genomic fingerprint matches between cattle, sewage, and water isolates. Campylobacters were commonly isolated from surface waters and faeces from most animal species. Restriction fragment length polymorphism of the Campylobacter flaA gene identified several location and host species-specific (cattle, goose, pig) fingerprints. Molecular subtyping of these bacterial pathogens shows considerable promise as a tool for determining the sources of faecal pollution of water.     

Characteristics of Staphylococcus hyicus strains isolated from pig carcasses in two different slaughterhouses

In a previous study, we showed that coagulase positive staphylococci, which are often used as indicators for Staphylococcus aureus, are frequently found on pig carcasses. Further characterization of the strains identified only a minor part as S. aureus. Selected non-S. aureus strains were all identified as Staphylococcus hyicus, However, two studies described in this species strains that produce staphylococcal enterotoxins. The aim of the present study was to further characterize such coagulase positive S. hyicus strains isolated from pig carcasses and to assess the results for their food safety relevance. A total of 189 strains from two abattoirs were characterized. Phenotypically, 98.9% showed non-pigmented colonies, 99.5% no haemolysis and 67.7% were egg yolk-positive. DNase activity was found in all but one isolate. Only five of the 189 strains were resistant to the antimicrobials tested. One strain harboured the mecA gene. Exfoliative toxin genes were detected in 31 (16.4%), S. aureus enterotoxin genes in none of the strains.The PFGE genotyping results show only a limited number of clusters. Cluster I included more than 50% of the strains. The fact that similar or closely related PFGE patterns of S. hyicus can be found on carcasses after bleeding in both abattoirs indicates the occurrence of widespread strains in the Swiss pig population. Moreover, the genotyping results revealed a remarkable homogeneity in S. hyicus strains isolated from different process stages in abattoir B, which could indicate a recontamination problem with persisting strains.     

Bacterial pathogen incidences in sludge from Swedish sewage treatment plants

This study surveyed the presence of bacterial pathogens in eight Swedish sewage treatment plants (STPs), with four different treatment methods, focusing on detection of zoonotic bacteria in raw and treated sludge. Salmonella spp., Listeria monocytogenes, Campylobacter coli and jejuni, Escherichia coli O157 and indicator bacteria were investigated. Samplings were performed from July 2000 to June 2002, resulting in 64 raw sludge samples and 69 treated sludge samples. The samples from raw sludge (67%) and treated sludge (55%) were positive for Salmonella; 49 different serotypes were detected. Restriction enzyme analysis and pulsed field gel electrophoresis of Salmonella serotypes indicated that Salmonella persists in STPs and that there is a continuous supply of new strains. There are differences in treatment methods concerning the reduction of pathogens and indicator bacteria. If spread on arable land, sludge increases the environmental load of pathogens; this increases the risk for spreading diseases to people and animals.     

Prevalence and antimicrobial resistance of Salmonella isolated from an integrated broiler chicken supply chain in Qingdao,China

The present study analyzed the prevalence and antimicrobial resistance of Salmonella along an integrated broiler chicken supply chain. A total of 172 Salmonella isolates were recovered from 1148 samples collected from four sample sources (breeder farms, broiler farms, abattoir, and retail markets), representing nine production stages. These Salmonella isolates were examined for antimicrobial susceptibility to 12 different antimicrobial agents using a disk diffusion assay. Among them, 168 were identified as six different serotypes of Salmonella enterica. The predominant serotype was S. Enteritidis (n = 116), followed by S. Infantis (n = 18), S. Gueuletapee (n = 16), S. Derby (n = 12), S. Meleagridis (n = 4), and S. London (n = 2). The remaining four isolates were serogroup-untypeable. A majority of the 172 isolates (96.51%) was resistant to one or more antibiotics and 61.05% of the Salmonella isolates showed a multidrug resistance phenotype. Statistical analysis indicated the one risk product stage for Salmonella contamination occurred in the sample source at the abattoir, specifically the stage of Carcasses after chilling. The majority of S. Enteritidis isolates shared the same pulsed-field gel electrophoresis (PFGE) cluster, suggesting that the S. Enteritidis strain might spread along the broiler chicken supply chain. The prevalence and antimicrobial resistance of Salmonella in different production stages suggest the importance of controlling Salmonella in the broiler chicken supply chain for public health, underlying the need for improved measures of reducing carcass contamination in abattoirs and the appropriate use of antimicrobials in broiler flocks.     

市售婴幼儿米粉中克罗诺杆菌的分子分型和耐药分析

为了解婴幼儿配方米粉中克罗诺杆菌的污染情况、分子分型特征及耐药性情况,采集广西区内市售6个厂家和品牌不同配方的婴幼儿米粉进行克罗诺杆菌分离及fusA基因的扩增、测序和MLST数据库比对分析。并应用脉冲场凝胶电泳（PFGE）对菌株进行分型鉴定及微量肉汤稀释法测定分离株对8种常见抗生素的最小抑菌浓度（Minimal Inhibitory Concentrations,MICs）。采集的268份婴幼儿米粉共分离到32株克罗诺杆菌,检出率为11.94%,菌株鉴定结果显示32株分离株包括22株C.sakazakii、6株C.malonaticus、3株C.dublinensis和1株C.muytjensii。不同添加成分的婴幼儿配方米粉污染情况差异明显,其中添加淮莲和果蔬的米粉污染率最高为17.78%和15.38%。PFGE分析显示32个菌株共分成32种不同的分子型,相似度为61.20%~92.30%,所有分离株对环丙沙星、庆大霉素和头孢噻肟都敏感,部分菌株（6.25%~43.75%）对氯霉素、四环素、甲氧苄啶/磺胺甲基异恶唑、头孢西丁和萘啶酸表现为中等敏感,有2个菌株对氯霉素表现为抗性。结果表明市售婴幼儿配方米粉中存在一定的克罗诺杆菌污染,尤其是添加营养成分的米粉。婴幼儿配方米粉中克罗诺杆菌污染来源广泛,部分菌株对一些抗菌药表现为中等敏感甚至是抗性,提示克罗诺杆菌对抗菌药的敏感性呈现减弱的趋势。