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Conservation of residue interactions in a family of Ca-binding proteins
Authors:Godzik  Adam; Sander  Chris
Affiliation:1BIOcomputing Programme, EMBL D-6900 Heidelberg, FRG 2Department of Biophysics, University of Warsaw Warsaw, Poland
Abstract:In the TNC family of Ca-binding proteins (calmodulin, parvalbumin,intestinal calcium binding protein and troponin C) {small tilde}70 well-conserved amino acid sequences and six crystal structuresare known. We find a clear correlation between residue contactsin the structures and residue conservation in the sequences:residues with strong sidechain–sidechain contacts in thethree-dimensional structure tend to be the more conserved inthe sequence. This is one way to quantify the intuitive notionof the importance of sidechain interactions for maintainingprotein three-dimensional structure in evolution and may usefullybe taken into account in planning point mutations in proteinengineering.
Keywords:evolution/  protein structure/  mutability/  conservation/  contact maps
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