System,Method and Software for Calculation of a Cannabis Drug Efficiency Index for the Reduction of Inflammation |
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Authors: | Nicolas Borisov Yaroslav Ilnytskyy Boseon Byeon Olga Kovalchuk Igor Kovalchuk |
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Affiliation: | 1.Moscow Institute of Physics and Technology, 9 Institutsky lane, Dolgoprudny, Moscow Region 141701, Russia;2.Department of Biological Sciences, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada; (Y.I.); (B.B.); (O.K.);3.Pathway Rx., 16 Sandstone Rd. S., Lethbridge, AB T1K 7X8, Canada;4.Biomedical and Health Informatics, Computer Science Department, State University of New York, 2 S Clinton St, Syracuse, NY 13202, USA |
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Abstract: | There are many varieties of Cannabis sativa that differ from each other by composition of cannabinoids, terpenes and other molecules. The medicinal properties of these cultivars are often very different, with some being more efficient than others. This report describes the development of a method and software for the analysis of the efficiency of various cannabis extracts to detect the anti-inflammatory properties of the various cannabis extracts. The method uses high-throughput gene expression profiling data but can potentially use other omics data as well. According to the signaling pathway topology, the gene expression profiles are convoluted into the signaling pathway activities using a signaling pathway impact analysis (SPIA) method. The method was tested by inducing inflammation in human 3D epithelial tissues, including intestine, oral and skin, and then exposing these tissues to various extracts and then performing transcriptome analysis. The analysis showed a different efficiency of the various extracts in restoring the transcriptome changes to the pre-inflammation state, thus allowing to calculate a different cannabis drug efficiency index (CDEI). |
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Keywords: | cannabis drug efficiency index signaling pathway impact analysis anti-inflammatory properties |
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