Parallel comparison of run-length-encoded strings on a linear systolic array |
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Authors: | Alessandro Bogliolo Valerio Freschi |
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Affiliation: | STI - University of Urbino, Piazza della Repubblica, 13, Urbino 61029, Italy |
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Abstract: | The length of the longest common subsequence (LCS) between two strings of M and N characters can be computed by an O(M × N) dynamic programming algorithm, that can be executed in O(M + N) steps by a linear systolic array. It has been recently shown that the LCS between run-length-encoded (RLE) strings of m and n runs can be computed by an O(nM + Nm − nm) algorithm that could be executed in O(m + n) steps by a parallel hardware. However, the algorithm cannot be directly mapped on a linear systolic array because of its irregular structure.In this paper, we propose a modified algorithm that exhibits a more regular structure at the cost of a marginal reduction of the efficiency of RLE. We outline the algorithm and we discuss its mapping on a linear systolic array. |
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Keywords: | Algorithms Longest common subsequence Run-length encoding Systolic array String comparison |
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