| 一种构建细小病毒进化树的加权距离方法 |
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| 引用本文： | 周立前,杨碧波. 一种构建细小病毒进化树的加权距离方法[J]. 湖南工业大学学报, 2012, 26(2): 10-15 |
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| 作者姓名： | 周立前 杨碧波 |
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| 作者单位： | 1. 湖南工业大学计算机与通信学院,湖南株洲,412007
2. 湘潭大学数学与计算科学学院,湖南湘潭,411105 |
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| 基金项目： | 湖南省国际合作基金资助项目（2011WK3032） |
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| 摘 要： | 应用对数关联距离与互信息距离加权的方法，对完全基因组DNA序列和蛋白质序列构建了30种细小病毒系统发育树。构建的发育树均将30种细小病毒分成细小病毒亚科和浓核病毒亚科两个大的分枝，其结构与国际病毒学分类委员会第八版报道的结果及已有文献的结果基本一致。且基于蛋白质序列构建的系统发育树比基于完全基因组DNA序列构建的要好。
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| 关 键 词： | 完全基因组 系统发育树 组合向量 对数关联距离 互信息距离 加权距离 |
| 收稿时间： | 2012-01-05 |
A Weighted Distance Method to Construct Parvovirus Phylogenetic Tree |
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| Zhou Liqian and Yang Bibo. A Weighted Distance Method to Construct Parvovirus Phylogenetic Tree[J]. Journal of Hnnnan University of Technology, 2012, 26(2): 10-15 |
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| Authors: | Zhou Liqian and Yang Bibo |
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| Affiliation: | 1.School of Computer and Communication,Hunan University of Technology,Zhuzhou Hunan 412007,China; 2.School of Mathematics and Computational Science,Xiangtan University,Xiangtan Hunan 411105,China) |
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| Abstract: | The phylogenetic trees of 30 parvoviruses are reconstructed by the weighted methods of log-correlation distance and mutual information distance. The trees are made of two branches of parvovirinae and densovirinae, and the structures are mainly consistent with the eighth report of the International Committee on Taxonomy of Viruses and results of the existing literature. The tree based on the protein sequences construction is better than that based on entire genome DNA sequences construction. |
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| Keywords: | complete genomes phylogenetic tree composition vector log-correlation distance mutual information distance weighted distance |
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