Identification and Functional Analysis of the Caffeic Acid O-Methyltransferase (COMT) Gene Family in Rice (Oryza sativa L.) |
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| Authors: | Shaoming Liang Shanbin Xu Di Qu Luomiao Yang Jingguo Wang Hualong Liu Wei Xin Detang Zou Hongliang Zheng |
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| Affiliation: | Key Laboratory of Germplasm Enhancement, Physiology and Ecology of Food Crops in Cold Region, Department of Agriculture, Northeast Agricultural University, Harbin 150030, China; (S.L.); (S.X.); (D.Q.); (L.Y.); (J.W.); (H.L.); (W.X.) |
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| Abstract: | Caffeic acid O-methyltransferase (COMT) is one of the core enzymes involved in lignin synthesis. However, there is no systematic study on the rice COMT gene family. We identified 33 COMT genes containing the methyltransferase-2 domain in the rice genome using bioinformatic methods and divided them into Group I (a and b) and Group II. Motifs, conserved domains, gene structure and SNPs density are related to the classification of OsCOMTs. The tandem phenomenon plays a key role in the expansion of OsCOMTs. The expression levels of fourteen and thirteen OsCOMTs increased or decreased under salt stress and drought stress, respectively. OsCOMTs showed higher expression levels in the stem. The lignin content of rice was measured in five stages; combined with the expression analysis of OsCOMTs and multiple sequence alignment, we found that OsCOMT8, OsCOMT9 and OsCOMT15 play a key role in the synthesis of lignin. Targeted miRNAs and gene ontology annotation revealed that OsCOMTs were involved in abiotic stress responses. Our study contributes to the analysis of the biological function of OsCOMTs, which may provide information for future rice breeding and editing of the rice genome. |
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| Keywords: | rice COMT lignin SNP abiotic stress expression patterns |
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