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Impact of allele-specific peptides in proteome quantification |
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| Authors: | Linfeng Wu Michael Snyder |
| Affiliation: | 1. Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA
Caprion Proteomics US LLC, Menlo Park, CA, USA;2. Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA Correspondence: Professor Michael Snyder, Department of Genetics, Stanford University School of Medicine, MC: 5120, 300 Pasteur Dr., M-344, Stanford, CA 94305, USA E-mail: mpsnyder@stanford.edu |
| Abstract: | MS-based proteome technologies have greatly improved our ability to detect and quantify proteomes across various biological samples. High throughput bottom-up proteome profiling in combination with targeted MS method, e.g. SRM assay, is emerging as a powerful approach in the field of biomarker discovery. In the past few years, increasing number of studies have attempted to integrate genomic and proteomic data for biomarker discovery. Here, we describe how allele-specific peptide can be applied in biomarker discovery and their impact in protein quantification. |
| Keywords: | Allele-specific peptides Genetic variant Protein quantitative trait loci SRM |