Redesign of the coenzyme specificity in L-Lactate dehydrogenase from Bacillus stearothermophilus using site-directed mutagenesis and media engineering

L-Lactate dehydrogenase (LDH) from Bacillus stearothermophilusis a redox enzyme which has a strong preference for NADH overNADPH as coenzyme. To exclude NADPH from the coenzyme-bindingpocket, LDH contains a conserved aspartate residue at position52. However, this residue is probably not solely responsiblefor the NADH specificity. In this report we examine the possibilitiesof altering the coenzyme specificity of LDH by introducing arange of different point mutations in the coenzyme-binding domain.Furthermore, after choosing the mutant with the highest selectivityfor NADPH, we also investigated the possibility of further alteringthe coenzyme specificity by adding an organic solvent to thereaction mixture. The LDH mutant, I51K:D52S, exhibited a 56-foldincreased specificity to NADPH over the wild-type LDH in a reactionmixture containing 15% methanol. Furthermore, the NADPH turnovernumber of this mutant was increased almost fourfold as comparedwith wild-type LDH. To explain the altered coenzyme specificityexhibited by the D52SI51K double mutant, molecular dynamicssimulations were performed.