Sediment nitrification and denitrification in a Lake Superior estuary

Inorganic nitrogen (N) transformations and removal in aquatic sediments are microbially mediated, and rates influence N-transport. In this study we related physicochemical properties of a large Great Lakes embayment, the St. Louis River Estuary (SLRE) of western Lake Superior, to sediment N-transformation rates. We tested for associations among rates and N-inputs, vegetation biomass, and temperature. We measured rates of nitrification (NIT), unamended base denitrification (DeNIT), and potential denitrification [denitrifying enzyme activity (DEA)] in 2011 and 2012 across spatial and depth zones. In vegetated habitats, NIT and DeNIT rates were highest in deep (ca. 2 m) water (249 and 2111 mg N m^− 2 d^− 1, respectively) and in the upper and lower reaches of the SLRE (> 126 and 274 mg N m^− 2 d^− 1, respectively). Rates of DEA were similar among zones. In 2012, NIT, DeNIT, and DEA rates were highest in July, May, and June, respectively. System-wide, we observed highest NIT (223 and 287 mg N m^− 2 d^− 1) and DeNIT (77 and 64 mg N m^− 2 d^− 1) rates in the harbor and from deep water, respectively. Amendment with NO₃⁻ enhanced DeNIT rates more than carbon amendment; however, DeNIT and NIT rates were inversely related, suggesting the two processes are decoupled in sediments. Average proportion of N₂O released during DEA (23–54%) was greater than from DeNIT (0–41%). Nitrogen cycling rates were spatially and temporally variable, but we modeled how alterations to water depth and N-inputs may impact DeNIT rates. A large flood occurred in 2012 which temporarily altered water chemistry and sediment nitrogen cycling.