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Thermodynamic activation and structural analysis of trypsin I from Monterey sardine (Sardinops sagax caerulea)
Authors:Aldo A Arvizu-Flores  Idania E Quintero-Reyes  Martha Felix-Lopez  Maria A Islas-Osuna  Gloria Yepiz-Plascencia  Ramón Pacheco-Aguilar  Arti Navare  Facundo M Fernández  Enrique F Velazquez-Contreras  Rogerio R Sotelo-Mundo  Francisco J Castillo-Yañez
Affiliation:1. Departamento de Ciencias Químico Biológicas, Universidad de Sonora, Blvd. Luis Encinas y Blvd. Rosales S/N, Hermosillo, Sonora 83000, Mexico;2. Centro de Investigación en Alimentación y Desarrollo, A.C. Carretera a La Victoria km 0.6, Apartado Postal 1735, Hermosillo, Sonora 83000, Mexico;3. Georgia Institute of Technology, School of Chemistry and Biochemistry, 901 Atlantic Drive, Atlanta, GA 30332, USA
Abstract:In this work, we report the molecular characterisation of trypsin I (Try I) from Monterey sardine (Sardinops sagax caerulea). Aspects such as thermodynamic activation parameters, molecular model and cDNA-deduced amino acid sequence allow a more in depth understanding of its activity at low temperatures. The analysis of the thermodynamic activation parameters suggests that this molecule is a cold-adapted protease. From the molecular cloning, we deduced the amino acid sequence and predicted a theoretical structural model of sardine Try I with a classical trypsin fold. Cold-adaptation of this enzyme probably comes from amino acid replacement of key residues to improve flexibility at low temperature, thus increasing kcat. The cold-adaptation of sardine Try I opens a wide range of biotechnological applications for this protease and also it is interesting from the structure function relationship point of view of serine protease proteins.
Keywords:Trypsin  Cold-adapted  Monterey sardine  Thermodynamic activation parameters  Sardinops sagax caerulea  Molecular modelling  cDNA
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