锗苯与甲醛和二苯甲酮的Diels-Alder反应的计算研究

采用密度泛函理论(DFT)在B3LYP/6-311G(d,p)水平对锗苯与甲醛和二苯甲酮的Diels-Alder反应的微观机理、势能剖面、取代基效应及溶剂化效应进行了理论计算。结果,所研究的反应均为协同的基元反应,形成Ge-O键的反应中,形成2个新键较大不同步,其它反应的不同步性相对较小。羰基碳原子上的苯基取代基于反应不利,而锗苯分子中锗原子上的C(CH_3)_3与CCl_3取代基则有利。在热力学和动力学上,有锗参与的反应均远比无锗的反应容易,而形成Ge-O键的反应比形成Ge-C键的反应容易,结果与实验一致。四氢呋喃溶剂对所研究反应的势能剖面影响较小。4个形成Ge-O键的反应在四氢呋喃溶剂中进行时,其活化能垒分别为38.03、89.75、29.92和29.87 kJ·mol~(-1)。     

2-锗萘与甲醛、二苯甲酮的杂环加成反应的研究

2-锗萘由于其芳香性和高反应性,而引起化学家们的浓厚兴趣.本文采用密度泛函理论(DFT)在 B3LYP/6-311G(d,p)水平,研究2-锗萘与甲醛、二苯甲酮的[2+2]和[4+2]杂环加成反应的微观机理、势能剖面,考察取代基和四氢呋喃溶剂对反应势能剖面的影响.计算结果表明,所研究的反应均为协同但非同步的方式,且Ge-O键总是先于C-C键形成.羰基碳原子上的苯取代基不利于反应,而2-锗萘分子中锗原子上的 C(CH3)3 与 CCl3 取代基却有利于反应.四氢呋喃溶剂对加成反应的势能剖面影响不大.[2+2]比[4+2]反应容易,与实验一致.     

硅苯、1-硅萘及9-硅蒽的[4+4]二聚反应的比较研究

采用密度泛函理论(DFT)在B3LYP/6-31G(d)水平上,研究硅苯、1-硅萘及9-硅蒽的[4+4]二聚反应的微观机理和势能剖面,考察了反应的取代基效应和溶剂效应.计算结果表明,所研究反应均为协同反应,且2个C-Si键同步形成.随反应物分子芳香环从小到大的增加,[4+4]反应在热力学和动力学上均变得越来越有利.硅苯...     

硅苯与腈氧化物1,3-偶极环加成反应的理论研究

采用密度泛函理论(DFT)方法在B3LYP/6-311G(d,p)水平研究了硅苯与腈氧化物的1,3-偶极环加成反应的微观机理、势能剖面,考察取代基和四氢呋喃溶剂对反应势能剖面的影响。计算结果表明,所研究反应均以协同但非同步的方式进行,且总是Si-O键先于C-C键形成。硅苯分子中Si原子上的给电子和吸电子取代基均有利于反应的进行,而腈氧化物碳原子上的2,4,6-三甲基苯基取代基在热力学上对反应非常不利。四氢呋喃溶剂对所研究反应的势能剖面影响不大。     

1-硅萘和2-硅萘与腈氧化物1,3偶极环加成反应理论研究

采用密度泛函理论(DFT)方法在B3LYP/6-311G(d,p)水平研究了1-硅萘和2-硅萘与腈氧化物的1,3偶极环加成反应的微观机理、势能剖面及取代基对反应势能剖面的影响。计算结果表明,所研究反应均以协同但非同步的方式进行,且总是Si-O键先于C-C键形成。1-硅萘和2-硅萘分子中Si原子上的给电子和吸电子取代基均有利于反应的进行。1-硅萘和2-硅萘具有相似的反应性,且二者的反应性均高于硅苯。     

二甲基硫醚与过氧化氢反应机理的研究及溶剂效应

采用密度泛函理论的B3LYP方法,在6-311+G(d,p)基组水平上研究了CH3SCH3与H2O2的微观反应机理,全参数优化了反应势能面上各驻点的几何构型,振动分析和内禀反应坐标(IRC)分析结果证实了中间体和过渡态的真实性,计算所得的键鞍点电荷密度的变化情况也确认了反应过程.结果表明,反应共分2步进行,主要经历了O对S的进攻、H转移以及O-O键断裂的历程.并分别考察了其在水中和甲苯的溶剂效应.结果表明,溶剂效应降低了反应的活化能,并使过渡态红外光谱蓝移.     

2-(4-甲氧基苯基)亚肼基乙酸与乙醛酸反应密度泛函理论研究

本文应用量子化学密度泛函理论(DFT)研究了2-(4-甲氧基苯基)亚肼基乙酸与乙醛酸的反应机理及动力学行为,并研究了不同取代基对反应的影响.在RB3LYP/6-31G*水平上,优化了各反应通道的反应物、中间体、过渡态及产物的几何构型,计算了各驻点的振动频率、零点能和电荷分布.计算结果表明,该反应有2条反应通道,分别生成(2Z)和(2E)-3(4-甲氧基苯基二氮烯基)丙烯酸.产物发生了键长的平均化和电荷的重新分布.两反应通道具有相同的反应入口,Z式产物为主要产物,2-(4-甲氧基苯基)亚肼基乙酸中苯环对位被给电子基团取代,有利于反应进行.     

取代基对水合5-羟基异噁唑质子转移影响的理论研究

在RHF／6-31G水平上,考察了三水合5-羟基异嗯唑(HIO·3H2O)及其3-位取代衍生物的基态质子转移反应。优化并计算了HIO·3H2O及其它水合衍生物和质子互变异构体的几何构型和振动频率分析,并用QTS2方法获得质子转移过程的过渡态。进一步根据统计热力学原理及过渡态理论,研究了该体系质子互变异构体之间相互转化的热力学及动力学性质。计算结果表明,在所研究的异(?)唑化合物中,吸电子取代基的醇式结构比酮式结构稳定,反应的速率较快;而供电子取代基的酮式比醇式结构稳定,质子转移的能垒较高。该研究对选择适当5-羟基异嗯唑的衍生物作药物合成中间体及取代基对质子转移的影响方面具有重要意义。     

叠氮酸与氨氰环加成反应的理论研究(英文)

采用B3LYP、QCISD、MP2方法在6-311+G(d)基组水平上对叠氮酸与氨氰环加成反应进行了详细研究。首先对所有的反应物、过渡态和产物的构型进行了全参数优化,并用频率分析和内禀反应坐标(IRC)方法对过渡态进行确认。以步长为0.1(amu)1/2 bohr的内禀反应坐标方法在B3LYP/6-311+G(d)方法和基组水平上计算了内禀反应坐标s为(-3.00～3.00)(amu)1/2 bohr范围内反应的键长、振动频率、NBO电荷变化情况。根据统计热力学方法和用Wigner校正的Eyring过渡态理论,计算了(200～450)K温度范围内反应热力学函数及速率常数,探讨了温度对反应的影响。结果表明,反应经过过渡态TS生成5-AT的活化能为117.14 kJ/mol(B3LYP)、130.18 kJ/mol(QCISD)和106.24 kJ/mol(MP2),产物的相对能量为-74.24 kJ/mol(B3LYP)、-87.01 kJ/mol(QCISD)和-79.09 kJ/mol(MP2);反应随温度的升高更具有动力学优势,但在热力学上低温下更易于进行,因此,结合热力学和动力学因素,我们认为(300～350)K是该反应的适宜温度。     

3-卤代吲唑水助质子转移反应机理的理论研究(英文)

在密度泛函B3LYP/6-311G**理论水平上,对气相和水相中3-卤代吲唑瓦变异构体进行几何构型伞自由度优化,获得它们在气相和水相中的几何结构和电子结构,PCM反应场溶剂模型用于水相计算.结果显示在气相和水相中,3.卤代吲唑的N1-H形式比N2-H形式稳定.探讨了不同的3-取代基团和溶剂化效应对互变异构体的几何结构,能量,电荷分布以及互变异构反应活化能的影响等.进一步研究了3-卤代吲唑水催化质子迁移的反应机理,提出了平面五元环的过渡态结构.     

Theoretical studies on kinetics,mechanism and thermochemistry of gas-phase reactions of HFE-449mec-f with OH radicals and Cl atom

A theoretical study on the mechanism and kinetics of the gas phase reactions of CF₃CHFCF₂OCH₂CF₃ (HFE-449mec-f) with the OH radicals and Cl atom have been performed using meta-hybrid modern density functional M06-2X using 6-31+G(d,p) basis set. Two conformers have been identified for CF₃CHFCF₂OCH₂CF₃ and the most stable one is considered for detailed study. Reaction profiles for OH-initiated hydrogen abstraction are modeled including the formation of pre-reactive and post-reactive complexes at entrance and exit channels. Our calculations reveal that hydrogen abstraction from the CH₂ group is thermodynamically and kinetically more facile than that from the CHF group. Using group-balanced isodesmic reactions, the standard enthalpies of formation for HFE-449mecf and radicals generated by hydrogen abstraction, are also reported. The calculated bond dissociation energies for CH bonds are in good agreement with experimental results. The rate constants of the two reactions are determined for the first time in a wide temperature range of 250–450 K. The calculated rate constant values are found to be 9.10 × 10⁻¹⁵ and 4.77 × 10⁻¹⁷ cm³ molecule⁻¹ s⁻¹ for reactions with OH radicals and Cl atom, respectively. At 298 K, the total calculated rate coefficient for reactions with OH radical is in good agreement with the experimental results. The atmospheric life time of HFE-449mec-f is estimated to be 0.287 years.     

Reaction analysis and visualization of ReaxFF molecular dynamics simulations

ReaxFF MD (Reactive Force Field Molecular Dynamics) is a promising method for investigating complex chemical reactions in relatively larger scale molecular systems. The existing analysis tools for ReaxFF MD lack the capability of capturing chemical reactions directly by analyzing the simulation trajectory, which is critical in exploring reaction mechanisms. This paper presents the algorithms, implementation strategies, features, and applications of VARxMD, a tool for Visualization and Analysis of Reactive Molecular Dynamics. VARxMD is dedicated to detailed chemical reaction analysis and visualization from the trajectories obtained in ReaxFF MD simulations. The interrelationships among the atoms, bonds, fragments, species and reactions are analyzed directly from the three-dimensional (3D) coordinates and bond orders of the atoms in a trajectory, which are accomplished by determination of atomic connectivity for recognizing connected molecular fragments, perception of bond types in the connected fragments for molecules or radicals, indexing of all these molecules or radicals (chemical species) based on their 3D coordinates and recognition of bond breaking or forming in the chemical species for reactions. Consequently, detailed chemical reactions taking place between two sampled frames can be generated automatically. VARxMD is the first tool specialized for reaction analysis and visualization in ReaxFF MD simulations. Applications of VARxMD in ReaxFF MD simulations of coal and HDPE (high-density polyethylene) pyrolysis show that VARxMD provides the capabilities in exploring the reaction mechanism in large systems with complex chemical reactions involved that are difficult to access manually.     

丙烯酸正丁酯聚合的Diels-Alder反应机理理论研究

本文从理论上对丙烯酸正丁酯(nBA)自引发聚合的Diels-Alder反应机理进行了研究.利用DFT方法在UB3LYP/6-31G*水平上对反应的最低能量路径进行了计算,各驻点能量分别采用MP2/6-311G**和B3LYP/6-311 G(3df;2p)进一步精确计算.结构表明:此Diels-Alder反应仅包括一种途径,即路径(I),另一条途径在热力学不支持.     

Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation

Chemical reactions are described by edge relabeling graph transformation rules, in which a substrate chemical graph is transformed into a product chemical graph by breaking existing bonds and creating new bonds between atoms. These edge relabeling graph transformation rules are themselves chemical graphs, where the order of a bond before the chemical reaction is distinguished from the order of the bond after the chemical reaction. The approach is illustrated by an implementation on top of the PerlMol collection of Perl modules for computational chemistry.     

Mechanism,kinetics and atmospheric fate of CF3CHCH2, CF3CFCH2, and CF3CFCF2 by its reaction with OH-radicals: CVT/SCT/ISPE and hybrid meta-DFT methods

The dual level direct dynamic study is carried out for the reactions of CF₃CHCH₂, CF₃CFCH₂ and CF₃CFCF₂ with hydroxyl radicals. The dynamic calculations are performed using the variational transition state theory (VTST) with interpolated single-point energies (ISPE) method at M06-2X/MG3S//M06-2X/6-31+G(d,p) level of theory. All the possible reactions such as abstraction and addition–elimination pathways are explored for the title reactions. The temperature dependent rate coefficients using canonical variational transition state theory with small curvature tunneling for the reaction of OH radicals with test molecules over the temperature range of 200–3000 K are computed. The predicted rate coefficients (in 10⁻¹² cm³ molecule⁻¹ s⁻¹) using CVT/SCT/ISPE methodology for the reaction of CF₃CHCH₂, CF₃CFCH₂ and CF₃CFCF₂ with OH radicals are 1.48, 1.02 and 1.77, respectively, are in good agreement with reported ones at 298 K. The atmospheric lifetimes for the test molecules CF₃CHCH₂, CF₃CFCH₂ and CF₃CFCF₂ are calculated at 277 K to be 8, 11 and 6 days, respectively. Global warming potentials are also reported for the different time horizon of 20, 100 and 500 years.     

CH3S与CH2SH自由基反应的密度泛函理论研究

用量子化学从头算和密度泛函理论(DFT)对CH3S与CH2SH自由基反应进行了研究。在B3LYP/6-311+G(d,p)水平上优化了反应通道各驻点物种(反应物、中间体、过渡态和产物)的几何构型,用内禀反应坐标(IRC)计算和频率分析的方法对过渡态结构及连接性进行了验证。在QCISD(T)/6-311++G(d,p)水平上计算了各物种的单点能,并对总能量进行了零点能校正。研究结果表明,CH3S与CH2SH反应为多通道反应,有3条可能的反应通道。反应物首先通过C-S键相互作用形成链状碳-硫偶合中间体IM1,再经过裂解和脱氢气机理生成主要产物P1(CH3SH+CH2S)和次要产物P2和P3。根据势能面分析,所有反应均为吸热反应。相对于CH3S与CH2SH,各产物能量分别为(-175.2,335.5和331.5)kJ.mol-1。     

Post Hartree-Fock and density functional theory studies on structure and conformational stability of nitrosoethylene and substituted compounds of nitrosoethylene

Post Hartree-Fock and density functional theory (DFT) methods were used to study the different conformers of nitrosoethylene H-CH=CH-NO, and substituted compounds of the nitrosoethylene R-CH=CH-NO (R = Cl, NH2, N(CH3)2, OH, OCH3). The molecules were optimized at MP2/6-31G* level of theory of ab initio and B3LYP/6-31G* and B3PW91/6-31G* levels of theory of DFT. Special emphasis has been given to the effect of substitution of pi-electron donor groups NH2, N(CH3)2, OH, and OCH3, which play a major role in modifying the geometrical parameters of -N=O group by the electronic transmission effects through the central group -CH=CH-. The ability of DFT methods to predict the bond length adjacent to the atoms having lone pair electrons has been discussed. The conformational stabilities have been studied using the relative energies and DFT parameters such as chemical hardness and chemical potential. The role of intra-molecular hydrogen bond on the equilibrium structure has been discussed. The vibrational spectra for the different conformers of the nitrosoethylene and substituted compounds have been generated using the MP2/6-31G* level of theory.