Why do fish strand? An analysis of ten years of flow reduction monitoring data from the Columbia and Kootenay rivers,Canada

Stranding of fish due to flow reductions has been documented in the near shore of the Columbia and Kootenay Rivers, Canada, and can result in sub‐lethal or lethal effects on fish. Ten years (1999–2009) of monitoring data have been collected at sites below two hydro‐electric dams (Hugh‐L‐Keenleyside and Brilliant Dam) following flow reductions. A generalized linear mixed effects model analysed the probability of a stranding event in relation to environmental and operational variables including the rate of change in the water levels, the duration of shoreline inundation prior to a reduction (wetted history), the river stage, the magnitude of the reduction, distance downstream from the dam, time of day, day of year (season) and whether a site had been physically altered to mitigate stranding. The results demonstrated statistically significant effects on stranding risk from minimum river stage, day of the year and whether a site had been physically re‐contoured. The combination of investigated factors giving the highest probability of stranding was a large magnitude reduction completed in the afternoon in midsummer, at low water levels when the near shore had been inundated for a long period. This research is significant in its approach to assessing years of ecosystem scale monitoring data and using the modelling results to determine ways for these findings to be applied in regulated river management to minimize fish stranding. It also highlighted data gaps that require addressing and provides ecosystem scale results to compare with stranding studies carried out in mesocosms. © 2014 The Authors. River Research and Applications published by John Wiley & Sons Ltd.     

Seasonal Rearing Habitat in a Large Mediterranean‐Climate River: Management Implications at the Southern Extent of Pacific Salmon (Oncorhynchus spp.)

Pacific salmon (Oncorhynchus) use a variety of rearing environments prior to seaward migration, yet large river habitats and their use have not been well defined, particularly at the southernmost salmon range where major landscape‐level alterations have occurred. We explored juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) presence along the river continuum and in main‐channel and off‐channel habitats of a regulated California Mediterranean‐climate river. Over an 8‐year period, off‐channels of the lower Mokelumne River exhibited slower and warmer water than the main‐channel. Probability of salmonid presence varied by stream reach and habitat types. Steelhead and Chinook salmon both demonstrated transitional responses to the dry season, with juveniles leaving off‐channels by midsummer. This corresponded to flow recession, increasing water temperatures, salmonid growth and end of emigration period. Main‐channel steelhead observations continued until the following storm season, which brought cool flood flows to reconnect off‐channels and the next juvenile cohort of both species to the river. Within arid climates, low‐gradient off‐channels appear more transiently used than in cooler and more northern humid climate systems. Within a highly regulated Mediterranean‐climate river, off‐channel habitats become increasingly scarce, disconnected or temperature limiting in low‐gradient reaches both seasonally and due to anthropogenic modifications. These observations may provide guidance for future management within large salmon streams. Copyright © 2015 John Wiley & Sons, Ltd.     

Fish assemblages and biotic integrity of a highly modified floodplain river,the Upper Mississippi,and a large,relatively unimpacted tributary,the Lower Wisconsin

The Upper Mississippi River is a dynamic floodplain river that has been largely transformed by navigational levees and dams since the 1930s. The pools upstream of each dam are lake‐like and only about the upper third of each reach retains a riverine character. In contrast, the Wisconsin River is not managed for commercial navigation and today its lower 149 km represent one of the least‐degraded large river reaches in central North America. Riverine reaches in both the Mississippi and Wisconsin rivers have similar macro‐habitats including numerous islands, large side channels, and connected backwaters and floodplain lakes. In this study, shoreline electrofishing samples were collected during summer 2002 and 2003 to characterize resident fish assemblages. We compared fish species abundance, biomass, and biotic integrity along main and side channel borders between the Upper Mississippi River and the Lower Wisconsin River. We expected that, in the absence of environmental degradation, fish composition and structure would be similar between the Mississippi and Wisconsin rivers, and between channel types within each river. Nonmetric multidimensional scaling and redundancy analysis revealed that fish species in the Mississippi River, unlike in the Wisconsin River, were characteristic of non‐riverine habitats. We consider non‐riverine fish assemblages indicative of environmental impairment. The main and side channel sites in the Mississippi River had more variable fish assemblages than the Wisconsin River. Analyses of fish index of biotic integrity scores showed that environmental condition was excellent for both channel types in the Wisconsin River, whereas in the Mississippi River the side channel was rated good and the main channel only fair. We conclude that differences between the two rivers and between channel types of the Mississippi River are consistent with direct and indirect effects of navigation. This study demonstrates the utility of a fish index of biotic integrity, an inexpensive and rapid bioassessment tool, for detecting change in ecological health on one of the world's largest rivers. Copyright © 2006 John Wiley & Sons, Ltd.     

Juvenile masu salmon in a regulated river

We examined the relationship between the physical environment and habitat use of juvenile masu salmon, Oncorhynchus masou, in the Nobori River in Hokkaido, Japan to provide a perspective for the conservation of fish habitat in regulated streams. The study was undertaken during the autumn and winter, with an emphasis on the hierarchy of three spatial scales: microhabitat, channel‐unit and reach scales. The microhabitat‐scale analysis indicated juvenile masu salmon preferred a midstream habitat type, with a greater depth (Avg. ± SD: 35.4 ± 14.2 cm) and high (43.4 ± 23.1 cm s^?1) and uniform current velocities during the autumn, and a channel margin habitat type with a moderate current (about 20 cm s^?1) and submerged cover during winter. In addition, different cover types have different roles in determining juvenile salmon distributions during winter. Grass cover had extremely high carrying capacities, whereas coarse substrate cover provided winter habitat for larger juvenile salmon. Channel‐unit scale analyses showed that abundance of juvenile salmon tended to be higher in pools than runs in the autumn through winter. Reach‐scale analysis showed that abundance and mean body length of juvenile salmon significantly differed between differently regulated reaches during winter, associated with the dominant cover type in each reach. This study demonstrated that the habitat conditions determining juvenile masu salmon distribution differ according to the season and scale of analysis. Therefore, for conservation of fish communities, it is important to evaluate and conserve or create fish habitats in regulated reaches, with a focus on the hierarchy of spatial scales and seasonal differences. Copyright © 2007 John Wiley & Sons, Ltd.     

Dam Operations Affect Route‐specific Passage and Survival of Juvenile Chinook Salmon at a Main‐stem Diversion dam

Diversion dams can negatively affect emigrating juvenile salmon populations because fish must pass through the impounded river created by the dam, negotiate a passage route at the dam and then emigrate through a riverine reach that has been affected by reduced river discharge. To quantify the effects of a main‐stem diversion dam on juvenile Chinook salmon in the Yakima River, Washington, USA, we used radio telemetry to understand how dam operations and river discharge in the 18‐km reach downstream of the dam affected route‐specific passage and survival. We found evidence of direct mortality associated with dam passage and indirect mortality associated with migration through the reach below the dam. Survival of fish passing over a surface spill gate (the west gate) was positively related to river discharge, and survival was similar for fish released below the dam, suggesting that passage via this route caused little additional mortality. However, survival of fish that passed under a sub‐surface spill gate (the east gate) was considerably lower than survival of fish released downstream of the dam, with the difference in survival decreasing as river discharge increased. The probability of fish passing the dam via three available routes was strongly influenced by dam operations, with passage through the juvenile fish bypass and the east gate increasing with discharge through those routes. By simulating daily passage and route‐specific survival, we show that variation in total survival is driven by river discharge and moderated by the proportion of fish passing through low‐survival or high‐survival passage routes. Copyright © 2016 John Wiley & Sons, Ltd.     

USING A NON‐PHYSICAL BEHAVIOURAL BARRIER TO ALTER MIGRATION ROUTING OF JUVENILE CHINOOK SALMON IN THE SACRAMENTO–SAN JOAQUIN RIVER DELTA

Anthropogenic alterations to river systems, such as irrigation and hydroelectric development, can negatively affect fish populations by reducing survival when fish are routed through potentially dangerous locations. Non‐physical barriers using behavioural stimuli are one means of guiding fish away from such locations without obstructing water flow. In the Sacramento–San Joaquin River Delta, we evaluated a bio‐acoustic fish fence (BAFF) composed of strobe lights, sound and a bubble curtain, which was intended to divert juvenile Chinook salmon (Oncorhynchus tshawytscha) away from Georgiana Slough, a low‐survival migration route that branches off the Sacramento River. To quantify fish response to the BAFF, we estimated individual entrainment probabilities from two‐dimensional movement paths of juvenile salmon implanted with acoustic transmitters. Overall, 7.7% of the fish were entrained into Georgiana Slough when the BAFF was on, and 22.3% were entrained when the BAFF was off, but a number of other factors influenced the performance of the BAFF. The effectiveness of the BAFF declined with increasing river discharge, likely because increased water velocities reduced the ability of fish to avoid being swept across the BAFF into Georgiana Slough. The BAFF reduced entrainment probability by up to 40 percentage points near the critical streakline, which defined the streamwise division of flow vectors entering each channel. However, the effect of the BAFF declined moving in either direction away from the critical streakline. Our study shows how fish behaviour and the environment interacted to influence the performance of a non‐physical behavioural barrier in an applied setting. Published 2012. This article is a U.S. Government work and is in the public domain in the USA.     

The effect of wood and temperature on juvenile coho salmon winter movement,growth, density and survival in side‐channels

In British Columbia, side‐channels have been built to compensate for lost salmonid habitat. Most are structurally simple with little in‐stream wood; however, they support high densities of juvenile coho salmon. We longitudinally divided in halves the top 100 m of two dead‐end artificial side‐channels, one side‐channel with low winter water temperatures (surface‐fed) and one with relatively higher water temperatures (groundwater‐fed), closed the downstream end of each side‐channel with two‐way traps, and treated only one half of each channel with bundles of wood. Trapped fish were marked daily and coho salmon movement, growth and smolt output were monitored for two years. Wood addition increased juvenile coho winter carrying capacity and spring smolt output only in the ‘colder’ surface‐fed side‐channel. In contrast, in the groundwater‐fed side‐channel, with relatively higher water temperatures, the wood treatment slightly reduced the channel's carrying capacity and the spring output of coho salmon smolts. Copyright © 2003 John Wiley & Sons, Ltd.     

JUVENILE SALMON RESPONSE TO THE PLACEMENT OF ENGINEERED LOG JAMS (ELJS) IN THE ELWHA RIVER,WASHINGTON STATE,USA

Engineered log jams (ELJs) are increasingly being used in large rivers to create fish habitat and as an alternative to riprap for bank stabilization. However, there have been few studies that have systematically examined how juvenile salmonids utilized these structures relative to other available habitat. We examined Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch) and trout (O. mykiss and O. clarki) response to the placement of engineered log jams (ELJs) in the Elwha River, Washington State, USA. We used summer snorkel surveys and a paired control‐treatment design to determine how engineered log jams in a large river system affect the density of juvenile salmon. We hypothesized that densities of juvenile salmonids would be greater in habitats with ELJs than in habitats without ELJs in the Elwha River and that this ELJ effect would vary by species and size class. Juvenile salmonid density was higher in ELJ units for all control‐treatment pairs except for one pair in 2002 and one pair in 2003. Positive mean differences in juvenile salmon densities between ELJ and non‐ELJ units were observed in two of four years for all juvenile salmon, trout greater than 100 mm and juvenile Chinook salmon. Positive mean differences occurred in one of 4 years for juvenile coho salmon and trout less than 100 mm. The results suggest that ELJs are potentially useful for restoring juvenile salmon habitat in the Elwha River, Washington State, USA. Copyright © 2011 John Wiley & Sons, Ltd.     

Size selection from fishways and potential evolutionary responses in a threatened Atlantic salmon population

The evolutionary effects of harvest on wild fish populations have been documented around the world; however, sublethal selective pressures can also cause evolutionary changes in phenotypes. For migratory fishes, passage facilities may represent instances of nonlethal selective pressure. Our analysis of 6 years of passage data suggests that certain fish passage facilities on the Penobscot River have been exerting selective pressure against large‐bodied, anadromous Atlantic salmon (Salmo salar). At the second and third dams in the river, a 91‐cm salmon was 21%–27% and 12%–16% less likely to pass than a 45‐cm salmon, respectively. Fish size positively influences egg survival and number and is a heritable trait. Therefore, in a wild‐reproducing population, exclusion of large fish from spawning areas may have population‐level impacts. In the Penobscot River, most returning adults derive from a hatchery program that collects its broodstock after passing the first dam in the river. Analysis of fork lengths of salmon returning to the Penobscot River from 1978 to 2012 provided mixed support for evolution of size at maturity in different age classes in a pattern that may be expected from interactions with conservation hatchery operations. Additionally, slow‐maturing and iteroparous individuals that represent the largest salmon size classes were essentially lost from the population during that time, and Penobscot River fish have shorter fork lengths at maturity than Atlantic salmon in undammed systems.     

Performance of a One‐Dimensional Hydraulic Model for the Calculation of Stranding Areas in Hydropeaking Rivers

Fish stranding is a critical issue in rivers with peaking operations. The ability to accurately predict potential stranding areas can become a decisive factor to assess environmental impacts and to plan mitigation measures. The presented work shows that common procedures suggested in the literature in the use of one‐dimensional (1D) models for flood zone mapping are not always applicable to compute stranding areas. Specific and easy‐to‐understand guidance needs to be given for smaller‐scale issues. We provide specific guidelines to accurately predict potential stranding areas in a cost‐effective manner. By analysing four different river morphologies in detail in a peaking river, we find that the optimal geometry effort (number of cross sections) does not necessarily coincide with the maximum and it varies between channel types according to river physical characteristics such as sinuosity and channel complexity. The use of a 1D model can provide good estimates with an optimal geometry layout. Copyright © 2014 John Wiley & Sons, Ltd.     

A self‐correction technique for real‐time simulation of regulated rivers

An automatic self‐correction scheme is presented for online adjustment of stream‐flow forecasts during simulation of river systems with regulating structures, when actual flow data for interior points are available in real time. Another scheme is presented which allows for the modelling of channel losses due to physical effects such as evapotranspiration, bank storage and diversions. A previously developed river simulation/reservoir management model has been modified to include both schemes. The model is particularly useful for real‐time, short‐term flood forecasting and reservoir operation. The model application is made to the Lower Colorado River in Texas.     

黄河下游宽滩河段泥沙均衡配置方法

黄河下游宽滩河段具有重要的滞洪沉沙作用,为了维护黄河下游河槽均衡稳定,治理"二级悬河",合理利用泥沙资源,开展了黄河下游宽滩河段泥沙均衡配置研究。提出了黄河下游宽滩河段泥沙均衡配置方法,通过黄河下游宽滩河段泥沙配置层次分析,确定泥沙配置目标和评价指标,分析了黄河下游宽滩河段泥沙均衡配置的配置方式、配置单元和配置能力,并建立了黄河下游宽滩河段泥沙均衡配置数学模型。     

黄河下游宽河段河床边界条件变化特征分析

受水沙条条件及人类活动的共同影响，黄河下游河床边界近年来发生了很大变化，通过对不同时期下游卫星照片、地形资料及河道横断面变化的分析，阐明了河道不同部位边界条件的变化特征：与50年代相比，近年来水河槽尤其是主槽过洪宽度和过水面积明显减小，原本开敝通畅的滩区受生产堤及拦滩道路、渠堤的影响变得封闭不畅，滩唇高仰、堤河低洼的局势进一步加刷。     

Estimating adult Chinook salmon exposure to dissolved gas supersaturation downstream of hydroelectric dams using telemetry and hydrodynamic models

Gas bubble disease (GBD) has been recognized as a potential problem for fishes in the Columbia River basin. GBD results from exposure to gas supersaturated water created by discharge over dam spillways. Spill creates a downstream plume of water with high total dissolved gas supersaturation (TDGS) that may be positioned along either shore or mid‐channel, depending on dam operations. We obtained spatial data on fish migration paths and migration depths for adult spring and summer Chinook salmon, Oncorhynchus tshawytscha, during 2000. Migration paths were compared to output from a two‐dimensional (2‐dimensional) hydrodynamic and dissolved gas model to estimate the potential for GBD expression and to test for behavioural avoidance of the high TDGS plume. We observed salmon swam sufficiently deep in the water column to receive complete hydrostatic compensation 95.9% of the time spent in the Bonneville Dam tailrace and 88.1% of the time in the Ice Harbor Dam tailrace. The majority of depth uncompensated exposure occurred at TDGS levels >115%. Adult Chinook salmon tended to migrate near the shoreline and they tended to remain in relatively deep water. Adults moved into the high dissolved‐gas plume as often as they moved out of it downstream of Bonneville Dam, providing no evidence that adults moved laterally to avoid areas with elevated dissolved gas levels. When water depths decreased due to reduced river discharge, adults tended to migrate in the deeper navigation channel downstream from Ice Harbor Dam. The strong influence of dam operations on the position of the high‐TDGS plume and shoreline‐orientation behaviours of adults suggest that exposure of adult salmonids to high‐TDGS conditions may be minimized using operational conditions that direct the spilled water mid‐channel. Our approach illustrates the potential for combined field and modelling efforts to estimate the fine‐scale environmental conditions encountered by fishes in natural and regulated rivers. Published in 2007 by John Wiley & Sons, Ltd.     

Population effect of a large‐scale stream restoration effort on Chinook salmon in the Pahsimeroi River,Idaho

Stream habitat restoration is an important tool for fisheries management in impaired lotic systems. Although small‐scale benefits of stream habitat restoration are commonly investigated, it is difficult to demonstrate population effects. The Pahsimeroi River Chinook salmon Oncorhynchus tshawytscha population was previously restricted to the lower portion of the river by multiple irrigation structures. To address fish passage issues, a combination of restoration projects was initiated including barrier removals, instream flow enhancements and installation of fish screens on diversions. The largest barrier was removed in 2009, more than doubling the amount of accessible linear habitat. We hypothesized restoration efforts would expand the distribution of spawning salmon in the Pahsimeroi River watershed, leading to a broader distribution of juveniles. We also hypothesized a broader juvenile distribution would have population effects by reducing the prevalence of density‐dependent growth and survival. Redds were documented in newly accessible habitat immediately following barrier removal and accounted for a median of 42% of all redds in the Pahsimeroi River watershed during 2009–2015. Snorkel surveys also documented juvenile rearing in newly accessible habitat. Juvenile productivity increased from a median of 64 smolts/female spawner for brood years 2002–2008 to 99 smolts/female spawner for brood years 2009–2014. Overall, results suggested increased habitat accessibility in the Pahsimeroi River broadened the distribution of spawning adult and rearing juvenile salmon and reduced the effects of density‐dependent survival. Large‐scale stream restoration efforts can have a population effect. Despite the large‐scale effort and response, habitat restoration alone is likely not sufficient to restore this population.     

红水河流域大型取水泵房的型式选择

红水河干流河槽狭窄、切割较深,河床及岸坡多为基岩出露,滩多水急,设计洪水位与设计枯水位差值悬殊.采用直流供水系统的火力发电厂需要从河流取大量循环冷却水,按发电机组容量和不同时期设计了潜没式圆形、竖井式圆形、露天式矩形三种型式的大型取水泵房.文章对这些取水泵房的设计进行总结和分析,为地表水取水泵房的设计提供帮助和启示.     

Ecology of an estuarine mysid shrimp in the Columbia River (USA)

The estuarine mysid, Neomysis mercedis, has colonized John Day and other run‐of‐the‐river Reservoirs of the Columbia River, over 400 km from the estuary. In John Day Reservoir N. mercedis numbers peaked (2 m^?3) in August in areas near the dam in association with lower water velocity and softer bottom than at the upstream sampling sites. Neomysis broods were primarily released in late spring and early fall. Gut content analysis showed that Neomysis feeds mostly on cladoceran zooplankton and rotifers in John Day Reservoir. Diel vertical migration was documented, with daytime distribution restricted to the bottom and preferentially to the soft‐textured sediments in the deepest areas. Common pelagic fishes in the reservoir, especially juvenile American shad (Alosa sapidissima) and chinook salmon (Oncorhynchus tshawytscha), are daytime zooplankton feeders that cannot prey on Neomysis owing to mysid diel vertical migration. Thus, Neomysis has become an important food web component in John Day Reservoir. We also collected N. mercedis further upstream in Lower Granite Reservoir, where another estuarine crustacean, Corophium salmonis, also is reported, underscoring the need to better understand the role of these estuarine invertebrates in the trophic ecology of the Columbia River. Copyright © 2006 John Wiley & Sons, Ltd.     

Juvenile coho salmon behavioural characteristics in Klamath river summer thermal refugia

During the summer in the main‐stem Klamath River, juvenile salmonids respond positively to cooler tributary temperatures by congregating in large schools at the mouths of these tributaries, referred to as thermal refugia. The purpose of this paper is to summarize results from coho salmon (Oncorhynchus kisutch) thermal refugia studies conducted since 2006 in the Klamath River. Results showed that juvenile coho salmon started using thermal refugia when the Klamath River main‐stem temperature approached approximately 19 °C. The majority of the juvenile coho salmon within the studied thermal refugia were found in the slower velocity habitat associated with cover. Juvenile coho salmon counts in the studied thermal refugia dramatically decreased at temperatures >22–23 °C, suggesting that this approximates their upper thermal tolerance level. Although some juvenile coho salmon were very mobile, others chose, until smoltification, to rear in the mouths and lower reaches of non‐natal tributaries where thermal refugia occurred, apparently because of suitable habitat conditions. Information gained from these investigations will improve our knowledge of the life history of coho salmon in the Klamath River drainage and how they use the main‐stem river. Copyright © 2010 John Wiley & Sons, Ltd.     

Effects of Dam Removal on Tule Fall Chinook salmon Spawning Habitat in the White Salmon River,Washington

Condit Dam is one of the largest hydroelectric dams ever removed in the USA. Breached in a single explosive event in October 2011, hundreds‐of‐thousands of cubic metres of sediment washed down the White Salmon River onto spawning grounds of a threatened species, Columbia River tule fall Chinook salmon Oncorhynchus tshawytscha. We investigated over a 3‐year period (2010–2012) how dam breaching affected channel morphology, river hydraulics, sediment composition and tule fall Chinook salmon (hereafter ‘tule salmon’) spawning habitat in the lower 1.7 km of the White Salmon River (project area). As expected, dam breaching dramatically affected channel morphology and spawning habitat due to a large load of sediment released from Northwestern Lake. Forty‐two per cent of the project area that was previously covered in water was converted into islands or new shoreline, while a large pool near the mouth filled with sediments and a delta formed at the mouth. A two‐dimensional hydrodynamic model revealed that pool area decreased 68.7% in the project area, while glides and riffles increased 659% and 530%, respectively. A spatially explicit habitat model found the mean probability of spawning habitat increased 46.2% after dam breaching due to an increase in glides and riffles. Shifting channels and bank instability continue to negatively affect some spawning habitat as sediments continue to wash downstream from former Northwestern Lake, but 300 m of new spawning habitat (river kilometre 0.6 to 0.9) that formed immediately post‐breach has persisted into 2015. Less than 10% of tule salmon have spawned upstream of the former dam site to date, but the run sizes appear healthy and stable. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.     

Performance of a prototype surface collector for juvenile salmonids at Bonneville Dam's first powerhouse on the Columbia River,Oregon

During April–July 2000, we radio‐tagged and released juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (Oncorhynchus mykiss) to evaluate a prototype surface flow bypass at Bonneville Dam on the Columbia River. The mock bypass, called a prototype surface collector (PSC), had six vertical slot entrances that were each 6 m wide and 12 m deep. The PSC was retrofitted to the upstream face of Bonneville Dam's First Powerhouse. Our objectives were to: (1) assess species‐specific differences in movement patterns and behaviour of fish within 6 m of the face of the PSC, (2) estimate the efficiency and effectiveness of the PSC and (3) evaluate factors affecting the performance of the PSC. We found that 60–72% of the fish, depending on species, detected within 6 m of the PSC entered it. Of the fish that passed the First Powerhouse at turbines 1–6, 79–83% entered the PSC. Diel period was a significant contributor to PSC performance for all species, and day of year was a significant contributor to PSC performance for subyearling Chinook salmon. The PSC was twice as effective (%fish/%flow) as the spillway, passing 2.5:1 steelhead and subyearling Chinook salmon and 2.4:1 yearling Chinook salmon per unit of water. If fully implemented, the PSC would increase the percentage of fish that pass the First Powerhouse through non‐turbine routes from 65–77% (without the PSC) to 76–85% (with the PSC), depending on species. Published in 2008 by John Wiley & Sons, Ltd.