Lessons from a Minimal Genome: What Are the Essential Organizing Principles of a Cell Built from Scratch?

One of the primary challenges facing synthetic biology is reconstituting a living system from its component parts. A particularly difficult landmark is reconstituting a self-organizing system that can undergo autonomous chromosome compaction, segregation, and cell division. Here, we discuss how the syn3.0 minimal genome can inform us of the core self-organizing principles of a living cell and how these self-organizing processes can be built from the bottom up. The review underscores the importance of fundamental biology in rebuilding life from its molecular constituents.     

Improvement of lysozyme recovery method from the precipitate of protein-anionic surfactant complexes

A new protein separation process using a surfactant and a polar organic solvent consists of a precipitation step and a recovery step. In the precipitation step, a protein-surfactant complex is precipitated from an aqueous solution, when an ionic surfactant, sodium di(2-ethylhexyl) sulfosuccinate (AOT), is added to an aqueous solution, including protein (lysozyme). In the recovery step, the precipitate is dissolved in a polar organic solvent, such as acetone, and the protein is recovered as precipitates when a very small amount of salt solution was added to remove surfactants from the protein-surfactant complex. However, the details of the protein recovery step from precipitate have not been studied yet. In this study, the improvement of the protein recovery step was examined from the viewpoint of a recovery ratio of protein and a remaining ratio of surfactant. The optimum NaCl concentration in the feed for the protein recovery was in the range of 0.05–0.2 kmol/m³. As the NaCl concentration in the feed increased to more than 0.2 kmol/m³, the precipitation ratio decreased due to the electrostatic screening effect of NaCl. It was found that the addition of a very small amount of NaCl solution to acetone was unnecessary when NaCl was included in the feed lysozyme solution. On the other hand, as the NaCl concentration decreased to less than 0.05 kmol/m³, the precipitation ratio was decreased due to the low re-precipitation of protein by the addition of a small amount of NaCl solution in acetone. In the case of the feed containing no salt, the desired NaCl concentration added to acetone was in the range above 0.2 kmol/m³. In addition, the most suitable volume ratio of acetone to feed was found to be 0.2.     

A PAM control method for a matrix converter based on a virtual AC/DC/AC conversion method

In this paper, a novel control method for a matrix converter is proposed. The proposed method is a PAM (Pulse Amplitude Modulation) control method based on a virtual AC/DC/AC conversion method. Output voltage amplitude is controlled by controlling a virtual DC link voltage with a virtual rectifier. Output frequency is controlled by a virtual inverter. First, the proposed method is explained. Next, the validity of the proposed method is confirmed through simulation and experiment using a 750‐W prototype matrix converter. Moreover, various characteristics of the proposed method and conventional virtual AC/DC/AC method are compared through experiment. As a result of the experiment, it has been understood that total harmonic distortion of output current and common‐mode voltage can be reduced compared with the case of using a conventional virtual AC/DC/AC conversion method. © 2008 Wiley Periodicals, Inc. Electr Eng Jpn, 166(4): 88–96, 2009; Published online in Wiley InterScience ( www.interscience. wiley.com ). DOI 10.1002/eej.20601     

Low dissipation current GaAs prescaler IC

A 1 GHz variable modulus freqency divider with very low dissipation current has been developed. Using a high-transconductance (200?250 mS/mm) FET by Pt burying technology and series gating source-coupled FET logic, the dissipation current of the fabricated IC was reduced to 3.2 mA at 1 GHz operation.     

A control method for the matrix converter based on virtual AC/DC/AC conversion using carrier comparison method

This paper proposes a novel control method based on the virtual AC/DC/AC conversion for the matrix converter. The virtual AC/DC/AC conversion method is a very simple strategy to control the input current and the output voltage for the matrix converter. There are two new topics proposed in this paper. First, this paper proposes the minimum switching loss modulation on the virtual rectifier. In our proposed modulation, only two arms switching in the virtual rectifier using DC link current control by the virtual inverter can obtain clean sinusoidal input current. Second, a novel lean controlled carrier modulation on the virtual inverter is proposed. The leans of the triangle carrier are controlled by the duty ratio of the rectifier side pulse. The lean controlled carrier reduces harmonic distortion of the input current by avoiding interference between the rectifier control and the inverter control. These new proposals are confirmed by simulation and experimental results. © 2005 Wiley Periodicals, Inc. Electr Eng Jpn, 152(3): 65–73, 2005; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/eej.20144     

Upflow anaerobic sludge blanket (UASB) treatment of supernatant of cow manure by thermal pre-treatment.

Upflow anaerobic sludge blanket (UASB) methane fermentation treatment of cow manure that was subjected to screw pressing, thermal treatment and subsequent solid-liquid separation was studied. Conducting batch scale tests at temperatures between 140 and 180 degrees C, the optimal temperature for sludge settling and the color suppression was found to be between 160-170 degrees C. UASB treatment was carried out with a supernatant obtained from the thermal treatment at the optimal conditions (170 degrees C for 30 minutes) and polymer-dosed solid-liquid separation. In the UASB treatment with a COD(Cr) loading of 11.7 kg/m3/d and water temperature of 32.2 degrees C, the COD(Cr) level dropped from 16,360 mg/L in raw water to 3,940 mg/L in treated water (COD(Cr), removal rate of 75.9%), and the methane production rate per COD(Cr) was 0.187 Nm3/kg. Using wastewater thermal-treated at the optimal conditions, also a methane fermentation treatment with a continuously stirred tank reactor (CSTR) was conducted (COD(Cr) in raw water: 38,000 mg/L, hydraulic retention time (HRT): 20 days, 35 degrees C). At the COD(Cr) loading of 1.9 kg/m3/d, the methane production rate per COD(Cr), was 0.153 Nm3/kg. This result shows that UASB treatment using thermal pre-treatment provides a COD(Cr), loading of four times or more and a methane production rate of 1.3 times higher than the CSTR treatment.     

Design of an adaptive observer for sensorless vector control of induction machines under regenerating conditions

The objective of this investigation is to stabilize a sensorless vector control system of induction motors by means of an adaptive observer in regenerating mode at very low speed. The adaptive observer gain is designed by means of the Routh–Hurwitz criterion. It is verified by simulation and experiment that the proposed system is stable. © 2003 Wiley Periodicals, Inc. Electr Eng Jpn, 145(4): 78–87, 2003; Published online in Wiley InterScience ( www.interscience.wiley.com ). DOI 10.1002/eej.10202     

Immobilization of multicopper oxidase from Pyrobaculum aerophilum onto an electrospun-aligned single-walled carbon nanotube surface via a carbon-nanotube-binding peptide for biocathode

Biofuel cells (BFCs) that produce electrical energy from organic resources through enzymatic reactions have been attracting significant attention. Owing to the high electrical conductivity of carbon nanotubes (CNTs), their modification on the electrode surface of a BFC is expected to increase the current, and their high specific surface area may be useful in increasing the power output. Previously, we constructed a biocathode by immobilizing multicopper oxidase from Pyrobaculum aerophilum (McoP) with a carbon nanotube binding peptide (CBP) sequence on the CNTs. This resulted in higher current densities than when using enzymes without CBP sequences. However, owing to the randomly stacked CNTs on the surface of the electrodes, their conductive properties were impaired and performance as biocathodes was poor. Herein, we constructed a biocathode in which single-walled CNTs (SWCNTs) were oriented one-dimensionally and McoP is immobilized on the surface of an SWNCT via CBP. The current density was successfully increased by two-fold by orienting the CNTs and orienting and immobilizing McoP on their surfaces. This technology provides insights into the development of biodevices with controlled orientation of both the SWCNTs and enzymes immobilized on their surfaces.     

SH4 RISC multimedia microprocessor

Unique, floating-point length-4 vector instructions prove more effective than conventional SIMD architecture for 3D graphics processing