Reduction of speckle noise from optical coherence tomography images using multi-frame weighted nuclear norm minimization method

In this paper, we propose a speckle noise reduction method for spectral-domain optical coherence tomography (SD-OCT) images called multi-frame weighted nuclear norm minimization (MWNNM). This method is a direct extension of weighted nuclear norm minimization (WNNM) in the multi-frame framework since an adequately denoised image could not be achieved with single-frame denoising methods. The MWNNM method exploits multiple B-scans collected from a small area of a SD-OCT volumetric image, and then denoises and averages them together to obtain a high signal-to-noise ratio B-scan. The results show that the image quality metrics obtained by denoising and averaging only five nearby B-scans with MWNNM method is considerably better than those of the average image obtained by registering and averaging 40 azimuthally repeated B-scans.     

A DFT study of BeX (X = S,Se, Te) semiconductor: Modified Becke Johnson (mBJ) potential

The electronic, optical and elastic properties of BeX were performed within full potential liberalized augmented plane wave method based on density functional theory (DFT). Generalized gradient approximation (GGA) and modified Becke Johnson (TB-mBJ) potential were used for exchange correlation. The mBJ gives improved band gap as compare to GGA and in close agreement with the experimental results. The present band gaps of BeS, BeSe and BeTe calculated within mBJ are 4.40, 4.0 and 2.40 eV respectively.     

Identification and enzymatic profiles of the predominant lactic acid bacteria isolated from soft‐variety Chhurpi,a traditional cheese typical of the Sikkim Himalayas

Abstract

This paper is the first report on the microbial population and predominant lactic acid bacteria (LAB) of two soft‐varieties (mild and strong flavoured) of chhurpi., a traditional cheese product of the Sikkim Himalayas. The enzymatic profiles and percentage hydrophobicity (as one criterion of potential adhesion capability) of the predominant LAB were also studied. The LAB, yeasts and viable mesophilic microbial numbers ranged from 7.6–7.9, 7.0–7.4 and 7.7–8.0 log₁₀ cfu/g respectively. The predominant LAB were identified as Lactobacillus plantarum, Lb. curvatus, Lb. fermentum, Lb. paracasei subsp. pseudoplcmtarum and Leuconostoc mesenteroides. They produced a wide spectrum of enzymes and also exhibited similar patterns of enzymatic activity between species. In comparison to the peptidases, they showed relatively weak esterase and lipase activities. No proteinase activity was detected. Most strains had a high degree of hydrophobicity. The results are discussed in relation to the possible role of the strains in food processing.     

Lignite aided dewatering of digested sewage sludge

Mechanical dewatering is commonly used to increase the solids content of municipal sludge prior to its disposal. However, if the rate of filtration is slow, mechanical dewatering can be expensive. In this study, the use of lignite to improve the sludge dewatering is investigated. The effectiveness of lignite conditioning of polyelectrolyte-flocculated sludge is examined using mechanical compression tests. Results show that lignite conditioning in conjunction with polyelectrolyte flocculation gives much better dewatering than the polyelectrolyte flocculation alone. Using Darcy's filtration theory, the specific cake resistance and permeability of the compressed cakes are obtained. Both of these parameters are significantly improved after lignite conditioning. Mercury porosimetry tests on compressed cakes show that the porosity of the lignite-conditioned sludge cake is much higher than that of the polyelectrolyte-flocculated sludge and it increases with increasing doses of lignite. The mercury porosimetry results show that the lignite pore volume of pores greater than 0.5 μm are reduced with increasing sludge ratio indicating that sludge is trapped within these pores, whereas smaller pores are unaffected. The yield stress curves for sludge, lignite and sludge-lignite mixtures show that the sludge filter cake is very compressible, but the lignite-conditioned cake has a range of compressibility which although more than lignite indicate that the cake is relatively incompressible at low pressures. Thus, lignite conditioning acts to maintain the permeability of the filter cake during compression dewatering by resisting cake compression. This leads to a trade-off between the rate of dewatering and the solids content of the compressed cake. With lignite conditioning, the dewatering rate can be increased by a factor of five for the same degree of water removal.     

Prediction of semiconducting behavior in minority spin of Co2CrZ（Z=Ga,Ge,As）:LSDA

正Volume optimization was performed to obtain the theoretical lattice constants by using the generalized gradient approximation(GGA).The electronic and magnetic properties of Heusler alloys Co_2CrZ(Z = Ga,Ge, As) were investigated by using local spin density approximation(LSDA).Amongst the systems under investigation, Co_2CrGe and Co_2CrGa give 100%spin polarization at the Fermi level(E_f)- Co_2CrGe and Co_2CrGa are the most stable half-metallic ferromagnets(HMFs);their E_F lie exactly at the gap of 0.24 eV and 0.38 eV,respectively,in the spin-down channel.Even though Co_2CrAs gives a distinct and bigger gap as compared to Co_2CrGa and Co_2CrGe, its E_F is not located at the middle of the gap in the spin-down channel.We have also found that the total magnetic moments increase as the Z goes from Ga to As.The calculated density of states and band structures show the HMF character for Co_2CrGe and Co_2CrGa.     

Prostate cancer mortality in northern Sweden, with special reference to tumor grade and patient age

Endogenous nitric oxide (NO) mediates certain aspects of synaptic plasticity and neurotoxicity associated with NMDA-type glutamate receptors. Neuronal NO synthase contains a modular protein-protein interaction motif, termed the PDZ domain, that links the synthase to a synaptic protein complex containing postsynaptic density protein PSD-95 and NMDA receptors. Characterization of this pathway has provided new insights into the role of NO in brain physiology and disease.     

Phenotypic identification and technological properties of lactic acid bacteria isolated from traditionally processed fish products of the Eastern Himalayas

Sukako maacha, gnuchi, sidra and sukuti are traditional smoked and sun-dried fish products of the Eastern Himalayan regions of Nepal and India. A total of 40 samples of sukako maacha (14), gnuchi (6), sidra (10) and sukuti (10) were collected and were analysed for microbial load. Population of lactic acid bacteria (LAB) as well as aerobic mesophilic counts ranged from 4.7-8.3 to 5.1-8.5 log cfu g(-1), respectively. A total of 189 strains of LAB were isolated from sukako maacha, gnuchi, sidra and sukuti samples, out of which 171 strains were cocci and 15 strains, were heterofermentative lactobacilli. LAB were identified on the basis of phenotypic characters including API system as Lactococcus lactis subsp. cremoris, Lactococcus lactis subsp. lactis, Lactococcus plantarum, Leuconostoc mesenteroides, Enterococcus faecium, Enterococcus faecalis, Pediococcus pentosaceus and Weissella confusa. LAB strains produced a wide spectrum of enzymes. Some strains of LAB showed antagonistic properties against pathogenic strains. None of the strains produced biogenic amines in the method applied. This paper is the first report on the microbial composition, mostly lactic acid bacteria, of traditionally processed fish products of Eastern Himalayas.     

Identification of yeast strains isolated from marcha in Sikkim, a microbial starter for amylolytic fermentation

Marcha or murcha is a traditional amylolytic starter used to produce sweet-sour alcoholic drinks, commonly called jaanr in the Himalayan regions of India, Nepal, Bhutan, and Tibet (China). The aim of this study was to examine the microflora of marcha collected from Sikkim in India, focusing on yeast flora and their roles. Twenty yeast strains were isolated from six samples of marcha and identified by genetic and phenotypic methods. They were first classified into four groups (Group I, II, III, and IV) based on physiological features using an API test. Phylogenetic, morphological, and physiological characterization identified the isolates as Saccharomyces bayanus (Group I); Candida glabrata (Group II); Pichia anomala (Group III); and Saccharomycopsis fibuligera, Saccharomycopsis capsularis, and Pichia burtonii (Group IV). Among them, the Group I, II, and III strains produced ethanol. The isolates of Group IV had high amylolytic activity. Because all marcha samples tested contained both starch degraders and ethanol producers, it was hypothesized that all four groups of yeast (Group I, II, III, and IV) contribute to starch-based alcohol fermentation.     

Cervid Prion Protein Polymorphisms: Role in Chronic Wasting Disease Pathogenesis

Chronic wasting disease (CWD) is a prion disease found in both free-ranging and farmed cervids. Susceptibility of these animals to CWD is governed by various exogenous and endogenous factors. Past studies have demonstrated that polymorphisms within the prion protein (PrP) sequence itself affect an animal’s susceptibility to CWD. PrP polymorphisms can modulate CWD pathogenesis in two ways: the ability of the endogenous prion protein (PrP^C) to convert into infectious prions (PrP^Sc) or it can give rise to novel prion strains. In vivo studies in susceptible cervids, complemented by studies in transgenic mice expressing the corresponding cervid PrP sequence, show that each polymorphism has distinct effects on both PrP^C and PrP^Sc. It is not entirely clear how these polymorphisms are responsible for these effects, but in vitro studies suggest they play a role in modifying PrP epitopes crucial for PrP^C to PrP^Sc conversion and determining PrP^C stability. PrP polymorphisms are unique to one or two cervid species and most confer a certain degree of reduced susceptibility to CWD. However, to date, there are no reports of polymorphic cervid PrP alleles providing absolute resistance to CWD. Studies on polymorphisms have focused on those found in CWD-endemic areas, with the hope that understanding the role of an animal’s genetics in CWD can help to predict, contain, or prevent transmission of CWD.     

The role of fluid polarity in the swelling of sodium-montmorillonite clay: A molecular dynamics and Fourier transform infrared spectroscopy study

Swelling clays are found extensively in various parts of the world, and sodium-montmorillonite (Na-MMT) is the main constituent of an expansive clay mineral. In this work, the swelling behavior of Na-MMT clay with a wide range of organic fluids, high polar through low polar fluids, is studied using a combination of Fourier transform infrared (FTIR) technique and molecular dynamics (MD) simulations. The construction of the representative clay–fluid models is carried out, and the nature of nonbonded interactions between clay and fluids is studied using MD. Our FTIR and MD simulations results suggest the significant nonbonded interactions between Na-MMT clay and polar fluids, such as formamide and water. The nonbonded interactions of Na-MMT with methanol and acetone are significantly less than those in Na-MMT with polar fluids. The interactions of the fluids with various entities of the clay such as SiO, FeOH, MgOH, and AlOH captured via the spectroscopy experiments and modeling provide a finer understanding of the interactions and their contributions to swelling. The MD simulations are able to capture the band shifts observed in the spectra obtained in the spectroscopy experiments. This work also captures the conformations of interlayer sodium ions with formamide, water, methanol, and acetone during swelling. These nonbonded interactions provide insight into the molecular mechanism that the polarity of fluids plays an important role in the initiation of interlayer swelling, alteration in the orientations, and evolution of microstructure of swelling clays at the molecular scale.