Genome-Wide Analyses of the Temperature-Responsive Genetic Loci of the Pectinolytic Plant Pathogenic Pectobacterium atrosepticum

Temperature is one of the critical factors affecting gene expression in bacteria. Despite the general interest in the link between bacterial phenotypes and environmental temperature, little is known about temperature-dependent gene expression in plant pathogenic Pectobacterium atrosepticum, a causative agent of potato blackleg and tuber soft rot worldwide. In this study, twenty-nine P. atrosepticum SCRI1043 thermoregulated genes were identified using Tn5-based transposon mutagenesis coupled with an inducible promotorless gusA gene as a reporter. From the pool of 29 genes, 14 were up-regulated at 18 °C, whereas 15 other genes were up-regulated at 28 °C. Among the thermoregulated loci, genes involved in primary bacterial metabolism, membrane-related proteins, fitness-corresponding factors, and several hypothetical proteins were found. The Tn5 mutants were tested for their pathogenicity in planta and for features that are likely to remain important for the pathogen to succeed in the (plant) environment. Five Tn5 mutants expressed visible phenotypes differentiating these mutants from the phenotype of the SCRI1043 wild-type strain. The gene disruptions in the Tn5 transposon mutants caused alterations in bacterial generation time, ability to form a biofilm, production of lipopolysaccharides, and virulence on potato tuber slices. The consequences of environmental temperature on the ability of P. atrosepticum to cause disease symptoms in potato are discussed.     

Water crisis through the analytic of urban transformation: an analysis of Bangalore’s hydrosocial regimes

ABSTRACT

This paper explores intensified water crisis in Bangalore (or Bengaluru) in India by using the analytic of three hydrosocial regimes: the catchment-based regime, the hydraulic regime and the speculative urban regime. It uses a wide range of qualitative interviews, scientific reports and secondary sources to analyze shifting urban trajectories, agrarian relations and their interlinkages with water. Historical ruptures (in the realm of governance, urban growth and changing urban–rural dynamics) allow one to highlight the complex role of speculative logics that shape urban expansion and water scarcity.     

新时代长江水资源开发保护思路与对策探讨

针对长江水资源开发保护中存在的主要问题,以及新时代长江经济带发展和长江大保护背景下面临的新要求,展开了专项分析研究。研究结果表明:正确把握长江水资源开发保护与水环境治理及经济社会发展之间的关系,是协调长江经济带发展与长江大保护的关键所在。根据研究结果,提出了应当以水环境改善为突破点的长江水资源、水环境、水生态以及水灾害等四水共治的思路;同时还提出了管理与技术、经济与法律及文化等多种手段相结合的针对长江水资源开发保护的对策和建议。     

食用百合高效生态栽培技术

文章从食用百合的经济意义入手,分析了现阶段百合生产存在的问题,总结了食用百合高效生态栽培技术,期望为食用百合的栽培提供理论基础与实践经验。     

Seasonal movements of muskellunge in the St. Clair – Detroit River System: Implications for multi-jurisdictional fisheries management

The St. Clair-Detroit River System contains a world-class Great Lakes muskellunge (Esox masquinongy) fishery that has avoided the declines observed in many Great Lakes muskellunge populations. Muskellunge are an upper trophic level predator, and therefore a naturally low-density species. Limited fishery-independent data exist on which to base management decisions. To remedy this, we initiated an acoustic telemetry study in May of 2016, in collaboration with the Great Lakes Acoustic Telemetry Observation System. Our objective was to describe patterns of movement of muskellunge in this large and open system to better understand their spatial ecology. We acoustically tagged 133 muskellunge in the Detroit River and Lake St. Clair, and movements of 58 fish that passed our data quality control screens were analyzed. We utilized mixed modelling to assess the effects of sex, length, release location, and season on daily movement rates. We found that movement rates only differed among seasons, with highest movement rates occurring in the fall and lowest movement rates in the winter. Muskellunge tagged at different locations exhibited distinct residency patterns, and fish frequently crossed jurisdictional and waterbody boundaries. Ultimately our study highlights the scope and patterns of muskellunge movement in a large, unimpounded system and demonstrates that management of these fish would benefit from consideration of their full distribution covering multiple management jurisdictions.     

Dietary differences among commercially important fishes in Lake Tanganyika assessed using stable isotope analysis

The pelagic fishery of Lake Tanganyika, which is largely made up of the three species Lates stappersii, Limnothrissa miodon, and Stolothrissa tanganicae, has been in decline, and there is no clear understanding of the primary underlying causes. It has been suggested that climate change has altered the primary productivity of the system, but detailed knowledge of the system's food web is required to elucidate the effect on higher trophic levels. The aim of this study is to determine the diet of the three commercially important fish species. Muscle tissue samples for stable isotope analysis were taken from February through April 2017, supplemented with stomach samples from L. stappersii for use in stomach content analysis. The stomach analysis showed an ontogenetic change in the diet composition of L. stappersii, shifting from copepods to fish larvae, supplemented with shrimp, to whole fish prey as the fish grew larger. Stable carbon and nitrogen isotope values from fish muscle were consistent with this observation, and also seemed to indicate that fish of similar sizes had similar diets, irrespective of species. This suggests that the diet of the pelagic fish species might be better explained by size, rather than species. The isotope data revealed a short range of δ¹⁵N values from primary consumers to fish, which may help explain the high fisheries productivity of Lake Tanganyika, and the strong impact of primary productivity changes on fisheries yield.     

Formaldehyde as a Chemical Defence Agent of Fruiting Bodies of Mycena rosea and its Role in the Generation of the Alkaloid Mycenarubin C

Mycenarubin C, a previously unknown red pyrroloquinoline alkaloid, was isolated from fruiting bodies of the mushroom Mycena rosea and its structure was elucidated mainly by NMR spectroscopy and mass spectrometry. Unlike mycenarubin A, the major pyrroloquinoline alkaloid in fruiting bodies of M. rosea, mycenarubin C, contains an eight-membered ring with an additional C₁ unit that is hitherto unprecedented for pyrroloquinoline alkaloids known in nature. Incubation of mycenarubin A with an excess of formaldehyde revealed that mycenarubin C was generated nearly quantitatively from mycenarubin A. An investigation into the formaldehyde content of fresh fruiting bodies of M. rosea showed the presence of considerable amounts of formaldehyde, with values of 5 μg per gram of fresh weight in fresh fruiting bodies. Although mycenarubin C did not show bioactivity against selected bacteria and fungi, formaldehyde inhibits the growth of the mycoparasite Spinellus fusiger at concentrations present in fruiting bodies of M. rosea. Therefore, formaldehyde might play an ecological role in the chemical defence of M. rosea against S. fusiger. In turn, S. fusiger produces gallic acid—presumably to detoxify formaldehyde by reaction of this aldehyde with amino acids and gallic acid to Mannich adducts.     

Information system ecology: An application of dataphoric ascendancy

Information systems, like biological systems, are susceptible to external perturbations. Similar to flora and fauna in a biome, species of data can be classified within a dataphora. While entropic properties and data geometries can be used to describe local species of data within a dataphora, they are not designed to describe the global properties of an information system or evaluate its stability. Ecologists have used Information Theories to describe macro-level properties of biological ecosystems and statistical tools to evaluate biological systems. This research leverages an ecological perspective to model information systems as a living system. Our findings support the theory of dataphoric ascendancy with Wikipedia having a Diversity Index value of 0.68, within the range of 0.65 and 0.80 that indicates a balanced state. We further support our findings with additional evaluations of other ecosystems including the predicted collapse of the information service known as the Digital Universe. This research allows for an information system’s stability to be (a) characterized and (b) predicted using ecological measures specific to the diversity of data within the ecosystem.